Gene: AT4G25730

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G25730
  • Transcript Identifier AT4G25730.1
  • Gene Type Coding gene
  • Location Chr4 : 13102906-13106718 : negative

Gene Family Information

  • ID HOM05D003534
  • #Genes/#Species 193/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G25730.1
  • uniprot F4JTD2

Descriptions

  • Description FtsJ-like methyltransferase family protein
  • Computational description FtsJ-like methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, rRNA processing, rRNA methylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spb1, C-terminal (InterPro:IPR012920), Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G01230.1); Has 30028 Blast hits to 21157 proteins in 1975 species: Archae - 200; Bacteria - 7297; Metazoa - 8731; Fungi - 3085; Plants - 939; Viruses - 236; Other Eukaryotes - 9540 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006364
IEA
InterProrRNA processing
GO:0032259
IEA
GOA Databasemethylation
GO:0032259
ISS
Gene Ontologymethylation
GO:0032259
IEA
InterPromethylation
GO:0001510
IEA
GOA DatabaseRNA methylation
GO:0001510
IBA
Gene OntologyRNA methylation1
GO:0031167
IEA
GOA DatabaserRNA methylation
GO:0031167
IBA
Gene OntologyrRNA methylation1
GO:0042254
IEA
GOA Databaseribosome biogenesis
GO:0000453
IEA
GOA Databaseenzyme-directed rRNA 2'-O-methylation
GO:0000466
IBA
Gene Ontologymaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1
GO:0000463
IBA
Gene Ontologymaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008649
IEA
GOA DatabaserRNA methyltransferase activity
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0008168
IEA
InterPromethyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0008650
IBA
Gene OntologyrRNA (uridine-2'-O-)-methyltransferase activity1
GO:0008173
IBA
Gene OntologyRNA methyltransferase activity1
GO:0016435
IBA
Gene OntologyrRNA (guanine) methyltransferase activity1
GO:0003729
IDA
Gene OntologymRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005634
IEA
InterPronucleus
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IBA
Gene Ontologynucleolus1
GO:0030687
IBA
Gene Ontologypreribosome, large subunit precursor1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002877 Ribosomal RNA methyltransferase FtsJ domain
IPR024576 Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR012920 Ribosomal RNA methyltransferase, Spb1, C-terminal
Mapman id Description
35.1 not assigned.annotated