Gene: Solyc11g011300.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g011300.2
  • Transcript Identifier Solyc11g011300.2.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 4371494-4379167 : positive

Gene Family Information

  • ID HOM05D000583
  • #Genes/#Species 954/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g011300.2.1
  • uniprot A0A3Q7IRE2
  • gene_id Solyc11g011300

Descriptions

  • Description Rhamnogalacturonate lyase (AHRD V3.3 *** A0A200QXQ6_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0030246
IEA
GOA Databasecarbohydrate binding
GO:0030246
IEA
InterProcarbohydrate binding
GO:0102210
IEA
GOA Databaserhamnogalacturonan endolyase activity
GO:0016829
IEA
GOA Databaselyase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
IEA
GOA Databaseextracellular region
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029413 Rhamnogalacturonan lyase, domain II
IPR010325 Rhamnogalacturonate lyase
IPR029411 Rhamnogalacturonan lyase, domain III
IPR011013 Galactose mutarotase-like domain superfamily
IPR008979 Galactose-binding-like domain superfamily
IPR014718 Glycoside hydrolase-type carbohydrate-binding
IPR013784 Carbohydrate-binding-like fold
Mapman id Description
35.1 not assigned.annotated