Gene: Solyc10g080740.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc10g080740.2
  • Transcript Identifier Solyc10g080740.2.1
  • Gene Type Coding gene
  • Location SL4.0ch10 : 61056791-61061629 : positive

Gene Family Information

  • ID HOM05D001843
  • #Genes/#Species 355/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc10g080740.2.1
  • uniprot A0A3Q7JFJ6
  • gene_id Solyc10g080740

Descriptions

  • Description Protein SMG7 (AHRD V3.3 *** A0A1U8E8Y3_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000184
IBA
GOA Databasenuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0051321
ISO
PLAZA Integrative Orthologymeiotic cell cycle AT5G19400
GO:0060548
ISO
PLAZA Integrative Orthologynegative regulation of cell death AT5G19400
GO:0031347
ISO
PLAZA Integrative Orthologyregulation of defense response AT5G19400
GO:0090306
ISO
PLAZA Integrative Orthologymeiotic spindle assembly AT5G19400

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0070034
IBA
GOA Databasetelomerase RNA binding
GO:0042162
IBA
GOA Databasetelomeric DNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005697
IBA
GOA Databasetelomerase holoenzyme complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G19400
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT5G19400

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR045153 Est1/Ebs1-like
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR018834 DNA/RNA-binding domain, Est1-type
IPR019458 Telomerase activating protein Est1, N-terminal
Mapman id Description
17.3.2.6 Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.effector protein (SMG7)