Gene: Solyc10g005900.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc10g005900.3
  • Transcript Identifier Solyc10g005900.3.1
  • Gene Type Coding gene
  • Location SL4.0ch10 : 579685-588517 : positive

Gene Family Information

  • ID HOM05D003810
  • #Genes/#Species 181/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc10g005900.3.1
  • uniprot A0A3Q7IAY0
  • gene_id Solyc10g005900

Descriptions

  • Description BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (AHRD V3.3 *** A0A1I9LP36_ARATH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006289
IEA
GOA Databasenucleotide-excision repair
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0006351
IEA
GOA Databasetranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0070816
IBA
GOA Databasephosphorylation of RNA polymerase II C-terminal domain
GO:0006281
IBA
GOA DatabaseDNA repair
GO:0006360
IBA
GOA Databasetranscription by RNA polymerase I
GO:0006366
IBA
GOA Databasetranscription by RNA polymerase II

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000439
IBA
IEA
GOA Databasetranscription factor TFIIH core complex
GO:0000439
IEA
InterProtranscription factor TFIIH core complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005675
IBA
GOA Databasetranscription factor TFIIH holo complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035925 BSD domain superfamily
IPR027079 TFIIH subunit Tfb1/GTF2H1
IPR005607 BSD domain
IPR013876 TFIIH p62 subunit, N-terminal
Mapman id Description
14.6.3.2.4 DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit TFB1
15.3.3.5.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB1