Gene: Solyc09g083000.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc09g083000.3
  • Transcript Identifier Solyc09g083000.3.1
  • Gene Type Coding gene
  • Location SL4.0ch09 : 64803378-64807950 : positive

Gene Family Information

  • ID HOM05D005575
  • #Genes/#Species 138/91
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc09g083000.3.1
  • uniprot A0A3Q7I6M5
  • gene_id Solyc09g083000

Descriptions

  • Description Armadillo repeat-containing protein LFR (AHRD V3.3 *** A0A2G2W133_CAPBA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:2000014
ISO
PLAZA Integrative Orthologyregulation of endosperm development Os07g0609766
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT3G22990
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy Os07g0609766
GO:0048653
ISO
PLAZA Integrative Orthologyanther development AT3G22990
GO:0009908
ISO
PLAZA Integrative Orthologyflower development AT3G22990
GO:0051783
ISO
PLAZA Integrative Orthologyregulation of nuclear division Os07g0609766
GO:0006338
IEA
GOA Databasechromatin remodeling
GO:0006338
IEA
InterProchromatin remodeling
GO:0006357
IBA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0045893
IBA
GOA Databasepositive regulation of transcription, DNA-templated
GO:0043044
IBA
GOA DatabaseATP-dependent chromatin remodeling

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031491
IBA
GOA Databasenucleosome binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G22990

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G22990
GO:0005654
IBA
GOA Databasenucleoplasm
GO:0016514
IBA
IEA
GOA DatabaseSWI/SNF complex
GO:0016514
IEA
InterProSWI/SNF complex
GO:0035060
IEA
GOA Databasebrahma complex
GO:0035060
IEA
InterProbrahma complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR011989 Armadillo-like helical
IPR021906 SWI/SNF-like complex subunit BAF250/Osa
IPR016024 Armadillo-type fold
Mapman id Description
12.4.1.3.1 Chromatin organisation.nucleosome remodeling.SWI/SNF chromatin remodeling complexes.plant-specific components.component LFR