Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 2.7e-250 868.2 455 100.0
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 6.3e-247 857.1 459 98.7
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 1.6e-245 852.4 455 98.2
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 4.7e-226 787.7 463 89.6
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 8.6e-220 766.9 464 87.7
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 4.0e-217 758.1 463 86.8
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 8.1e-210 733.8 414 90.3
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 3.0e-204 715.3 462 80.1
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 2.6e-200 702.2 463 79.3
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.9e-198 696.0 468 76.9
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 1.9e-198 696.0 461 78.3
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 7.1e-198 694.1 467 77.9
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 2.7e-197 692.2 463 75.8
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 2.7e-197 692.2 479 75.4
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 2.3e-196 689.1 468 79.1
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 5.1e-196 688.0 467 76.9
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 6.6e-196 687.6 468 79.1
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.5e-195 686.4 463 77.8
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 1.9e-195 686.0 468 78.4
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 5.6e-195 684.5 465 79.4
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 9.6e-195 683.7 463 74.1
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 8.1e-194 680.6 469 75.9
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 5.2e-193 677.9 461 74.6
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 5.2e-193 677.9 463 74.7
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 5.2e-193 677.9 463 75.8
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.5e-192 676.4 464 79.1
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 3.4e-192 675.2 463 74.7
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 1.3e-191 673.3 464 74.8
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 1.1e-190 670.2 457 74.4
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 2.4e-190 669.1 463 73.7
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.1e-189 666.0 463 73.2
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 4.6e-189 664.8 451 75.2
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 6.0e-189 664.5 463 73.0
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 6.0e-189 664.5 460 74.1
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 6.0e-189 664.5 463 75.4
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 7.8e-189 664.1 463 74.3
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 3.0e-188 662.1 467 73.9
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 3.9e-188 661.8 468 75.2
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 5.1e-188 661.4 458 75.3
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 5.1e-188 661.4 460 73.9
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 5.1e-188 661.4 463 73.0
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 1.9e-187 659.4 457 74.8
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 9.6e-187 657.1 464 75.0
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 1.6e-186 656.4 463 73.9
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.1e-186 656.0 469 74.4
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 2.8e-186 655.6 455 72.7
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 2.8e-186 655.6 464 74.4
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 6.2e-186 654.4 463 74.9
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 1.1e-185 653.7 455 73.8
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 5.3e-185 651.4 455 73.8
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 5.3e-185 651.4 484 70.7
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 9.0e-185 650.6 463 74.1
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 3.4e-184 648.7 463 74.1
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 7.6e-184 647.5 455 73.2
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 9.9e-184 647.1 464 73.7
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 1.3e-183 646.7 463 70.8
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 1.3e-183 646.7 463 71.7
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 3.8e-183 645.2 463 73.4
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 6.4e-183 644.4 509 67.4
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 6.4e-183 644.4 455 72.3
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 2.4e-182 642.5 463 70.4
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 2.4e-182 642.5 461 72.5
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 1.2e-181 640.2 457 72.9
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 7.9e-181 637.5 465 73.3
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 1.8e-180 636.3 443 75.2
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 3.0e-180 635.6 463 70.2
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 6.7e-180 634.4 421 74.1
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 8.7e-180 634.0 493 68.6
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 1.1e-179 633.6 416 75.7
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 1.5e-179 633.3 463 70.8
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 1.9e-179 632.9 465 72.9
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 2.5e-179 632.5 425 75.5
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 2.5e-179 632.5 468 69.9
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 3.3e-179 632.1 467 71.7
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 9.6e-179 630.6 425 75.1
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 2.8e-178 629.0 462 71.0
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.4e-177 626.7 416 75.0
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 5.3e-177 624.8 461 72.0
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 6.9e-177 624.4 459 72.1
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 6.9e-177 624.4 459 72.1
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 6.9e-177 624.4 459 72.1
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 1.2e-176 623.6 463 70.6
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 1.5e-176 623.2 462 69.9
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 4.5e-176 621.7 465 70.8
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 5.8e-176 621.3 463 70.4
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 1.3e-175 620.2 465 70.1
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 4.9e-175 618.2 465 69.5
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 4.9e-175 618.2 461 69.2
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.1e-174 617.1 463 70.8
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 5.5e-174 614.8 461 70.3
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 1.2e-173 613.6 464 71.1
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 1.6e-173 613.2 460 70.2
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 2.7e-173 612.5 464 70.9
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 6.0e-173 611.3 464 70.7
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 6.0e-173 611.3 461 70.1
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 3.0e-172 609.0 462 69.9
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 2.1e-170 602.8 487 66.9
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 2.8e-170 602.4 463 68.9
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 3.7e-170 602.1 461 69.6
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 4.8e-170 601.7 461 68.8
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 1.5e-168 596.7 401 74.1
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 7.6e-168 594.3 466 67.6
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 8.4e-167 590.9 461 66.4
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 3.2e-166 589.0 399 72.7
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 4.2e-166 588.6 465 69.2
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 3.5e-165 585.5 453 66.2
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 2.8e-162 575.9 454 65.0
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.3e-159 567.0 391 73.1
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 1.4e-158 563.5 415 70.1
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 7.7e-152 541.2 418 63.6
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 2.6e-136 489.6 380 69.7
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 2.2e-135 486.5 318 77.0
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 4.5e-128 462.2 399 57.6
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 1.0e-124 451.1 460 54.8
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 5.4e-121 438.7 402 54.5
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 5.5e-118 428.7 460 52.4
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 5.6e-102 375.6 412 51.5
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.3e-95 354.4 260 74.2
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 1.9e-94 350.5 287 59.6
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 3.0e-87 326.6 535 36.3
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 3.0e-71 273.5 188 71.3
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 9.0e-68 261.9 267 58.1
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 5.8e-59 232.6 249 53.8
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 7.6e-59 232.3 249 53.8
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 4.9e-50 203.0 207 56.0
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 9.0e-44 182.2 121 81.0
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 1.4e-41 174.9 161 60.2
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.1e-40 171.0 145 62.1
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 3.6e-40 170.2 146 61.6
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 5.0e-34 149.8 123 63.4
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 2.6e-22 110.9 60 88.3
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 2.5e-17 94.4 57 82.5
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 8.8e-15 85.9 70 67.1
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 1.2e-14 85.5 59 67.8
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 8.3e-13 79.3 65 72.3


User provided reference genes

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