Gene: Solyc08g007560.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc08g007560.3
  • Transcript Identifier Solyc08g007560.3.1
  • Gene Type Coding gene
  • Location SL4.0ch08 : 2113200-2114412 : positive

Gene Family Information

  • ID HOM05D000244
  • #Genes/#Species 1727/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc08g007560.3.1
  • uniprot A0A3Q7HKK8
  • gene_id Solyc08g007560

Descriptions

  • Description AT-hook motif nuclear-localized protein (AHRD V3.3 *** A0A1U8FN46_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0010228
IBA
GOA Databasevegetative to reproductive phase transition of meristem
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT3G60870
GO:0009640
ISO
PLAZA Integrative Orthologyphotomorphogenesis AT2G45430
GO:0009647
ISO
PLAZA Integrative Orthologyskotomorphogenesis AT2G45430

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003680
IBA
IEA
GOA Databaseminor groove of adenine-thymine-rich DNA binding
GO:0003680
IEA
InterProminor groove of adenine-thymine-rich DNA binding
GO:0003700
IBA
GOA DatabaseDNA-binding transcription factor activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G45430
GO:0042826
ISO
PLAZA Integrative Orthologyhistone deacetylase binding AT2G45430
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT2G45430

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005175 PPC domain
IPR014476 AT-hook motif nuclear-localized protein 15-29
Mapman id Description
15.5.8.1 RNA biosynthesis.transcriptional regulation.AHL transcription factor superfamily.clade-A transcription factor (AHL)