Gene: Solyc07g062570.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g062570.3
  • Transcript Identifier Solyc07g062570.3.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 65093921-65099229 : positive

Gene Family Information

  • ID HOM05D000050
  • #Genes/#Species 4474/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g062570.3.1
  • uniprot K4CGU0
  • gene_id Solyc07g062570

Descriptions

  • Description Ubiquitin-conjugating enzyme (AHRD V3.3 *** H6VUT0_9FABA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000209
IBA
GOA Databaseprotein polyubiquitination
GO:0006301
IBA
GOA Databasepostreplication repair
GO:0070534
IBA
GOA Databaseprotein K63-linked ubiquitination
GO:0010053
ISO
PLAZA Integrative Orthologyroot epidermal cell differentiation AT1G78870
GO:0010039
ISO
PLAZA Integrative Orthologyresponse to iron ion AT1G78870
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT1G78870
GO:0006511
ISO
PLAZA Integrative Orthologyubiquitin-dependent protein catabolic process AT1G78870

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0061631
IBA
GOA Databaseubiquitin conjugating enzyme activity
GO:0004842
ISO
PLAZA Integrative Orthologyubiquitin-protein transferase activity AT1G78870
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G78870

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus
GO:0031372
ISO
PLAZA Integrative OrthologyUBC13-MMS2 complex AT1G78870

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016135 Ubiquitin-conjugating enzyme/RWD-like
IPR000608 Ubiquitin-conjugating enzyme E2
Mapman id Description
19.2.2.1.3 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-conjugating E2 protein (UBC)