Gene: Solyc07g022760.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g022760.4
  • Transcript Identifier Solyc07g022760.4.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 21560723-21593387 : negative

Gene Family Information

  • ID HOM05D002048
  • #Genes/#Species 324/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g022760.4.1
  • uniprot A0A3Q7H9U7
  • gene_id Solyc07g022760

Descriptions

  • Description Pre-mRNA-processing protein 40A (AHRD V3.3 *** A0A2G2XIJ4_CAPBA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045292
IEA
GOA DatabasemRNA cis splicing, via spliceosome
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT1G44910

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0070063
ISO
PLAZA Integrative OrthologyRNA polymerase binding AT1G44910

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071004
IBA
GOA DatabaseU2-type prespliceosome
GO:0005685
IBA
GOA DatabaseU1 snRNP
GO:0016592
ISO
PLAZA Integrative Orthologymediator complex AT1G44910
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G44910

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036517 FF domain superfamily
IPR001202 WW domain
IPR039726 Pre-mRNA-processing factor Prp40
IPR002713 FF domain
IPR036020 WW domain superfamily
Mapman id Description
16.2.1.1.5.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP40A/B)