Gene: Solyc07g017400.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g017400.3
  • Transcript Identifier Solyc07g017400.3.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 6988407-7002738 : positive

Gene Family Information

  • ID HOM05D005445
  • #Genes/#Species 140/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g017400.3.1
  • uniprot A0A3Q7H5X8
  • gene_id Solyc07g017400

Descriptions

  • Description 26S proteasome regulatory subunit RPN13 (AHRD V3.3 *** A0A1U8H9R1_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010950
IEA
GOA Databasepositive regulation of endopeptidase activity
GO:0006511
IBA
GOA Databaseubiquitin-dependent protein catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070628
IBA
GOA Databaseproteasome binding
GO:0061133
IBA
GOA Databaseendopeptidase activator activity
GO:0043130
IBA
GOA Databaseubiquitin binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G26590

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IEA
InterProcytoplasm
GO:0000502
IEA
GOA Databaseproteasome complex
GO:0008541
IBA
GOA Databaseproteasome regulatory particle, lid subcomplex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032368 RPN13, DEUBAD domain
IPR044868 Rpn13/ADRM1, Pru domain
IPR006773 Proteasomal ubiquitin receptor Rpn13/ADRM1
IPR038633 Proteasomal ubiquitin receptor Rpn13/ADRM1, Pru domain superfamily
IPR038108 RPN13, DEUBAD domain superfamily
Mapman id Description
19.2.5.2.2.12 Protein homeostasis.ubiquitin-proteasome system.26S proteasome.19S regulatory particle.non-ATPase components.regulatory component RPN13