Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 9.5e-181 636.7 322 100.0
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 6.8e-179 630.6 322 99.1
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 8.3e-169 597.0 322 93.8
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.1e-165 586.6 312 93.6
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.1e-163 580.1 307 94.1
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 6.9e-139 497.7 322 77.3
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 4.2e-136 488.4 322 75.5
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 1.6e-135 486.5 323 75.2
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 7.9e-135 484.2 320 75.3
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 8.7e-134 480.7 322 73.6
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 2.5e-133 479.2 322 73.6
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 2.8e-132 475.7 299 77.9
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 6.2e-132 474.6 321 72.9
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.1e-131 473.8 323 72.4
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 2.4e-131 472.6 322 72.0
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 5.3e-131 471.5 320 72.5
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 3.4e-130 468.8 320 73.1
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 4.5e-130 468.4 323 73.4
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 5.8e-130 468.0 322 73.9
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 7.6e-130 467.6 320 73.4
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 3.8e-129 465.3 319 72.7
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 4.9e-129 464.9 320 72.8
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 9.3e-128 460.7 320 72.8
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 1.2e-127 460.3 317 71.6
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 1.2e-127 460.3 362 66.0
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 3.5e-127 458.8 320 72.5
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 6.0e-127 458.0 311 72.7
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 7.9e-127 457.6 322 70.8
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 1.3e-126 456.8 322 70.8
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 6.7e-126 454.5 325 71.4
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 1.1e-125 453.8 324 70.4
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 1.9e-125 453.0 323 70.9
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 3.3e-125 452.2 319 70.8
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 5.7e-125 451.4 324 71.0
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 5.7e-125 451.4 320 70.0
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 5.7e-125 451.4 320 70.0
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 9.6e-125 450.7 322 70.5
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 9.6e-125 450.7 340 70.6
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 9.6e-125 450.7 324 71.6
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 9.6e-125 450.7 325 72.3
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 1.3e-124 450.3 318 70.4
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 2.1e-124 449.5 322 70.2
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 2.8e-124 449.1 319 71.5
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 3.7e-124 448.7 319 72.4
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 6.3e-124 448.0 308 71.8
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 2.4e-123 446.0 323 70.0
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 2.4e-123 446.0 326 68.7
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 5.3e-123 444.9 321 69.5
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 6.9e-123 444.5 307 72.3
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 1.2e-122 443.7 320 68.8
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 2.6e-122 442.6 328 69.5
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 3.8e-121 438.7 321 68.8
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 3.2e-120 435.6 300 73.7
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 3.2e-120 435.6 317 70.7
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 7.2e-120 434.5 333 67.3
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 2.7e-119 432.6 317 71.0
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 3.5e-119 432.2 322 69.6
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 1.3e-116 423.7 360 62.8
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.6e-116 423.3 323 68.1
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 3.7e-116 422.2 319 68.7
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 8.2e-116 421.0 320 67.8
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 5.3e-115 418.3 322 68.3
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 6.9e-115 417.9 299 71.6
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 7.7e-114 414.5 308 66.9
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 1.3e-113 413.7 305 70.5
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 1.4e-112 410.2 320 67.2
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 1.4e-112 410.2 319 65.2
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.2e-111 407.1 319 66.8
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 3.6e-111 405.6 325 63.4
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 1.4e-110 403.7 324 64.8
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 3.0e-110 402.5 328 62.8
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 6.7e-110 401.4 293 69.3
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 8.8e-110 401.0 307 66.4
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 4.3e-109 398.7 300 66.3
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 1.7e-108 396.7 296 68.2
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 3.7e-108 395.6 318 61.6
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 4.8e-108 395.2 270 73.7
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 4.8e-108 395.2 293 67.9
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 6.3e-108 394.8 293 66.9
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 2.4e-107 392.9 296 67.9
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 6.9e-107 391.3 293 67.2
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 4.5e-106 388.7 301 65.8
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 1.3e-105 387.1 321 64.5
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 1.3e-105 387.1 321 64.8
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 1.7e-105 386.7 307 65.1
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 5.0e-105 385.2 301 65.1
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 1.4e-104 383.6 304 64.8
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 4.2e-104 382.1 301 64.8
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 7.2e-104 381.3 293 66.6
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 7.2e-104 381.3 289 68.2
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 7.2e-104 381.3 309 63.8
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.1e-101 374.0 281 67.6
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 1.5e-101 373.6 307 63.8
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.7e-100 370.2 371 54.4
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 5.3e-99 365.2 302 63.2
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 9.1e-99 364.4 318 60.7
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 1.8e-91 340.1 324 57.4
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 9.1e-91 337.8 356 56.2
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 4.5e-90 335.5 344 52.0
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 1.0e-89 334.3 352 54.3
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 2.5e-88 329.7 222 76.1
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.0e-86 324.3 324 55.9
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 3.4e-85 319.3 219 74.9
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 3.7e-84 315.8 244 66.4
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 2.6e-77 293.1 332 51.5
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 3.4e-77 292.7 197 77.7
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 7.5e-69 265.0 226 65.0
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 1.0e-65 254.6 293 48.8
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 1.0e-62 244.6 152 75.7
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 3.7e-60 236.1 226 56.2
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 6.4e-60 235.3 339 44.8
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 6.0e-58 228.8 356 41.0
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 7.8e-50 201.8 202 55.9
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 3.1e-38 163.3 121 67.8
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 2.5e-32 143.7 176 48.3
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 3.6e-31 139.8 90 73.3
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 2.0e-29 134.0 172 49.4
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 1.9e-27 127.5 100 65.0
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 1.9e-27 127.5 100 65.0
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 4.6e-26 122.9 338 30.8
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 3.0e-25 120.2 354 28.0
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 2.5e-24 117.1 297 30.3
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 9.9e-21 105.1 68 73.5
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 1.3e-20 104.8 86 65.1
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 6.4e-20 102.4 84 66.7
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 1.4e-19 101.3 84 65.5
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 1.4e-19 101.3 84 65.5
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 5.5e-19 99.4 78 69.2
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 1.5e-16 91.3 91 57.1
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 3.1e-14 83.6 52 69.2
Sopen09g008640 Solanum pennellii HOM05D011435 ORTHO05D012656 2.0e-13 80.9 125 44.0
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 6.5e-12 75.9 282 24.8
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 8.4e-12 75.5 43 79.1
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 3.2e-11 73.6 64 57.8


User provided reference genes

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