Gene: Solyc06g069480.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g069480.3
  • Transcript Identifier Solyc06g069480.3.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 40858859-40887884 : positive

Gene Family Information

  • ID HOM05D000924
  • #Genes/#Species 651/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g069480.3.1
  • uniprot A0A3Q7H0K5
  • gene_id Solyc06g069480

Descriptions

  • Description Helicase (AHRD V3.3 *** A0A200R859_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006401
IBA
GOA DatabaseRNA catabolic process
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT1G20960
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT1G20960

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G61140
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G20960
GO:0003724
IBA
GOA DatabaseRNA helicase activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G20960
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G20960
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT2G42270
GO:0005681
IEA
GOA Databasespliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR004179 Sec63 domain
IPR035892 C2 domain superfamily
IPR014756 Immunoglobulin E-set
IPR011545 DEAD/DEAH box helicase domain
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR036390 Winged helix DNA-binding domain superfamily
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR003593 AAA+ ATPase domain
Mapman id Description
16.2.7.1.4 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Brr2)