Gene: Solyc06g043170.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g043170.4
  • Transcript Identifier Solyc06g043170.4.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 27423868-27436306 : positive

Gene Family Information

  • ID HOM05D000526
  • #Genes/#Species 1037/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g043170.4.1
  • gene_id Solyc06g043170

Descriptions

  • Description Actin-related protein 5 (AHRD V3.3 *** A0A2G3C5G2_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT3G12380
GO:0030029
ISO
PLAZA Integrative Orthologyactin filament-based process AT3G12380
GO:0010082
ISO
PLAZA Integrative Orthologyregulation of root meristem growth AT3G12380
GO:0007275
ISO
PLAZA Integrative Orthologymulticellular organism development AT3G12380
GO:0080036
ISO
PLAZA Integrative Orthologyregulation of cytokinin-activated signaling pathway AT3G12380
GO:1904668
ISO
PLAZA Homology (enrichment)positive regulation of ubiquitin protein ligase activity HOM05D000526

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Homology (enrichment)protein binding HOM05D000526
GO:0097027
ISO
PLAZA Homology (enrichment)ubiquitin-protein transferase activator activity HOM05D000526
GO:0010997
ISO
PLAZA Homology (enrichment)anaphase-promoting complex binding HOM05D000526

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G12380
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G12380
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT3G12380

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR043129 ATPase, nucleotide binding domain
IPR004000 Actin family
IPR027664 Actin-related protein 5
Mapman id Description
12.4.3.2 Chromatin organisation.nucleosome remodeling.INO80 chromatin remodeling complex.component ARP5