Gene: AT3G12380

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G12380
  • Transcript Identifier AT3G12380.1
  • Gene Type Coding gene
  • Location Chr3 : 3938309-3941785 : negative

Gene Family Information

  • ID HOM05D000526
  • #Genes/#Species 1037/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G12380.1
  • symbol ARP5
  • Alias ATARP5,ACTIN-RELATED PROTEIN 5
  • uniprot Q940Z2

Descriptions

  • Description actin-related protein 5
  • Computational description actin-related protein 5 (ARP5); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1); Has 21592 Blast hits to 13553 proteins in 2425 species: Archae - 18; Bacteria - 280; Metazoa - 9176; Fungi - 4874; Plants - 2192; Viruses - 30; Other Eukaryotes - 5022 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1904668
ISO
PLAZA Homology (enrichment)positive regulation of ubiquitin protein ligase activity HOM05D000526
GO:0043044
IBA
GOA DatabaseATP-dependent chromatin remodeling
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IMP
Gene OntologyDNA repair1
GO:0007010
IEA
GOA Databasecytoskeleton organization
GO:0006338
IBA
Gene Ontologychromatin remodeling2
GO:0006355
IBA
Gene Ontologyregulation of transcription, DNA-templated2
GO:0080036
IMP
Gene Ontologyregulation of cytokinin-activated signaling pathway3
GO:0010082
IMP
Gene Ontologyregulation of root meristem growth3
GO:0007275
IMP
Gene Ontologymulticellular organism development1
GO:0030029
TAS
Gene Ontologyactin filament-based process4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010997
ISO
PLAZA Homology (enrichment)anaphase-promoting complex binding HOM05D000526
GO:0097027
ISO
PLAZA Homology (enrichment)ubiquitin-protein transferase activator activity HOM05D000526
GO:0005515
ISO
PLAZA Homology (enrichment)protein binding HOM05D000526
GO:0005200
ISS
Gene Ontologystructural constituent of cytoskeleton4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
IBA
Gene Ontologycytoplasm1 2
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
TAS
Gene Ontologynucleus1 4
GO:0005654
IEA
GOA Databasenucleoplasm
GO:0005654
IDA
Gene Ontologynucleoplasm1
GO:0031011
IBA
Gene OntologyIno80 complex2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004000 Actin family
IPR027664 Actin-related protein 5
IPR043129 ATPase, nucleotide binding domain
Mapman id Description
12.4.3.2 Chromatin organisation.nucleosome remodeling.INO80 chromatin remodeling complex.component ARP5