Gene: Solyc04g079870.2
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc04g079870.2
- Transcript Identifier Solyc04g079870.2.1
- Gene Type Coding gene
- Location SL4.0ch04 : 62171102-62172809 : positive
Gene Family Information
- ID HOM05D001790
- #Genes/#Species 365/99
- Phylogenetic origin
- ID ORTHO05D003691
- #Genes/#Species 209/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc04g079870.2.1
- uniprot A0A3Q7G9N2
- gene_id Solyc04g079870
Descriptions
- Description serine--tRNA ligase-like (AHRD V3.3 *** A0A2I4DVH0_9ROSI)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT5G27470 |
| GO:0006434 | IBA IEA | GOA Database | seryl-tRNA aminoacylation | |
| GO:0006434 | IEA | InterPro | seryl-tRNA aminoacylation | |
| GO:0006418 | IEA | GOA Database | tRNA aminoacylation for protein translation | |
| GO:0006418 | IEA | InterPro | tRNA aminoacylation for protein translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004812 | IEA | GOA Database | aminoacyl-tRNA ligase activity | |
| GO:0004812 | IEA | InterPro | aminoacyl-tRNA ligase activity | |
| GO:0004828 | IBA IEA | GOA Database | serine-tRNA ligase activity | |
| GO:0004828 | IEA | InterPro | serine-tRNA ligase activity | |
| GO:0000049 | IBA | GOA Database | tRNA binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0016874 | IEA | GOA Database | ligase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | IBA | GOA Database | cytosol |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002314 | Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) |
| IPR010978 | Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm |
| IPR002317 | Serine-tRNA ligase, type1 |
| IPR042103 | Serine-tRNA synthetase, type1, N-terminal domain superfamily |
| IPR015866 | Serine-tRNA synthetase, type1, N-terminal |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |