Gene: Solyc04g072260.3

General Information

Structural Information

Species Solanum lycopersicum
Gene Identifier Solyc04g072260.3
Transcript Identifier Solyc04g072260.3.1
Gene Type Coding gene
Location SL4.0ch04 : 57192705-57230141 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D002270
#Genes/#Species 297/100
Phylogenetic origin

ID ORTHO05D002866
#Genes/#Species 257/100
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

tid Solyc04g072260.3.1
uniprot A0A3Q7G7J5
gene_id Solyc04g072260

Descriptions

Short descriptions
Ortholog descriptions

Description Midasin (AHRD V3.3 *** A0A2G2ZQ87_CAPAN)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000027	IBA	GOA Database	ribosomal large subunit assembly
GO:0000027	IEA	InterPro	ribosomal large subunit assembly
GO:0006364	IBA	GOA Database	rRNA processing
GO:0000055	ISO	PLAZA Integrative Orthology	ribosomal large subunit export from nucleus	AT1G67120
GO:0009553	ISO	PLAZA Integrative Orthology	embryo sac development	AT1G67120
GO:0048638	ISO	PLAZA Integrative Orthology	regulation of developmental growth	AT1G67120

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016887	IEA	InterPro	ATP hydrolysis activity
GO:0005524	IEA	InterPro	ATP binding
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT1G67120

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	IEA	InterPro	nucleus
GO:0030687	IBA	GOA Database	preribosome, large subunit precursor
GO:0005737	ISO	PLAZA Integrative Orthology	cytoplasm	AT1G67120

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR040848	Midasin, AAA lid domain 7
IPR012099	Midasin
IPR041190	Midasin AAA lid domain 5
IPR003593	AAA+ ATPase domain
IPR011704	ATPase, dynein-related, AAA domain
IPR036465	von Willebrand factor A-like domain superfamily

Mapman id	Description
17.1.2.2.2.4	Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.pre-60S ribosomal subunit nuclear export.ATP-dependent export factor (MDN1)