Gene: Solyc04g047780.1

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g047780.1
  • Transcript Identifier Solyc04g047780.1.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 36885629-36890705 : positive

Gene Family Information

  • ID HOM05D001201
  • #Genes/#Species 520/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g047780.1.1
  • uniprot K4BRK6
  • gene_id Solyc04g047780

Descriptions

  • Description Protein ROS1 (AHRD V3.3 *-* A0A2G2Y7I1_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080111
IEA
GOA DatabaseDNA demethylation
GO:0080111
IEA
InterProDNA demethylation
GO:0006281
ISO
PLAZA Homology (enrichment)DNA repair HOM05D001201
GO:0006284
ISO
PLAZA Homology (enrichment)base-excision repair HOM05D001201
GO:0010150
ISO
PLAZA Integrative Orthologyleaf senescence AT4G34060
GO:0010216
ISO
PLAZA Integrative Orthologymaintenance of DNA methylation AT4G34060

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019104
IEA
GOA DatabaseDNA N-glycosylase activity
GO:0019104
IEA
InterProDNA N-glycosylase activity
GO:0035514
IEA
GOA DatabaseDNA demethylase activity
GO:0035514
IEA
InterProDNA demethylase activity
GO:0003824
ISO
PLAZA Homology (enrichment)catalytic activity HOM05D001201
GO:0051747
ISO
PLAZA Integrative Orthologycytosine C-5 DNA demethylase activity AT4G34060
GO:0051539
ISO
PLAZA Homology (enrichment)4 iron, 4 sulfur cluster binding HOM05D001201

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G34060

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044811 DNA glycosylase, plant
IPR028925 Demeter, RRM-fold domain
Mapman id Description
35.1 not assigned.annotated