Gene: Solyc04g045590.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g045590.3
  • Transcript Identifier Solyc04g045590.3.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 33443236-33448936 : positive

Gene Family Information

  • ID HOM05D006443
  • #Genes/#Species 124/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g045590.3.1
  • uniprot A0A3Q7G0B4
  • gene_id Solyc04g045590

Descriptions

  • Description Alpha-ketoglutarate-dependent dioxygenase alkB (AHRD V3.3 *** A0A2G2WST3_CAPBA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0035513
IBA
GOA Databaseoxidative RNA demethylation
GO:0035552
IBA
GOA Databaseoxidative single-stranded DNA demethylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008198
IBA
GOA Databaseferrous iron binding
GO:0035516
IBA
GOA Databaseoxidative DNA demethylase activity
GO:0035515
IBA
GOA Databaseoxidative RNA demethylase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IBA
GOA Databasecytoplasm
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily
IPR004574 Alkylated DNA repair protein AlkB
IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like
Mapman id Description
35.1 not assigned.annotated