Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g045590.3 Solanum lycopersicum HOM05D006443 ORTHO05D007797 9.7e-211 736.5 355 100.0
Sopen04g017520 Solanum pennellii HOM05D006443 ORTHO05D007797 5.3e-209 730.7 355 99.2
CAN.G237.4 Capsicum annuum HOM05D006443 ORTHO05D007797 1.6e-184 649.4 356 87.6
Nitab4.5_0008905g0010 Nicotiana tabacum HOM05D006443 ORTHO05D007797 3.8e-183 644.8 357 86.6
Nitab4.5_0001356g0010 Nicotiana tabacum HOM05D006443 ORTHO05D007797 2.8e-178 628.6 345 87.5
Peaxi162Scf00359g00713 Petunia axillaris HOM05D006443 ORTHO05D007797 2.9e-175 618.6 355 83.9
QL03p052624 Quercus lobata HOM05D006443 ORTHO05D007797 6.8e-148 527.7 363 70.8
Ciclev10031911m.g Citrus clementina HOM05D006443 ORTHO05D007797 4.4e-147 525.0 362 69.1
Actinidia30647 Actinidia chinensis HOM05D006443 ORTHO05D007797 1.9e-145 519.6 361 69.0
TWI36G0197 Tripterygium wilfordii HOM05D006443 ORTHO05D007797 1.2e-144 516.9 362 67.1
GSVIVG01010487001 Vitis vinifera HOM05D006443 ORTHO05D007797 1.6e-144 516.5 357 68.1
Duzib248G1079 Durio zibethinus HOM05D006443 ORTHO05D007797 1.3e-143 513.5 357 67.8
FvH4_4g23730 Fragaria vesca HOM05D006443 ORTHO05D007797 1.7e-143 513.1 354 70.6
Potri.003G171900 Populus trichocarpa HOM05D006443 ORTHO05D007797 1.7e-143 513.1 360 68.3
MSTRG.502 Avicennia marina HOM05D006443 ORTHO05D007797 2.3e-143 512.7 351 68.9
CSS0008831 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 2.3e-143 512.7 363 66.4
CSS0026603 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 2.3e-143 512.7 363 66.4
Sabra03G0125800 Salix brachista HOM05D006443 ORTHO05D007797 3.0e-143 512.3 361 68.4
Prupe.1G225500 Prunus persica HOM05D006443 ORTHO05D007797 3.9e-143 511.9 354 68.9
RcHm_v2.0_Chr4g0430211 Rosa chinensis HOM05D006443 ORTHO05D007797 3.9e-143 511.9 362 68.8
Gorai.012G175900 Gossypium raimondii HOM05D006443 ORTHO05D007797 1.5e-142 510.0 361 67.6
COL.COLO4_20406 Corchorus olitorius HOM05D006443 ORTHO05D007797 3.3e-142 508.8 362 67.1
Gohir.D04G182900 Gossypium hirsutum HOM05D006443 ORTHO05D007797 3.3e-142 508.8 361 67.6
Gohir.A04G139700 Gossypium hirsutum HOM05D006443 ORTHO05D007797 4.3e-142 508.4 361 67.6
Atru.chr11.2327 Acer truncatum HOM05D006443 ORTHO05D007797 7.3e-142 507.7 364 66.5
Cfa009372 Carpinus fangiana HOM05D006443 ORTHO05D007797 1.6e-141 506.5 362 66.9
Hma1.2p1_0065F.1_g035440 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 2.8e-141 505.8 354 66.9
Haze_12422 Corylus avellana HOM05D006443 ORTHO05D007797 3.6e-141 505.4 362 66.3
Migut.K00736 Erythranthe guttata HOM05D006443 ORTHO05D007797 1.4e-140 503.4 351 69.8
FAN22G2300 Fragaria x ananassa HOM05D006443 ORTHO05D007797 1.4e-140 503.4 354 69.5
MD13G1119500 Malus domestica HOM05D006443 ORTHO05D007797 5.3e-140 501.5 354 67.8
MELO3C011863.2 Cucumis melo HOM05D006443 ORTHO05D007797 6.9e-140 501.1 364 67.0
FAN07G1264 Fragaria x ananassa HOM05D006443 ORTHO05D007797 1.2e-139 500.4 354 68.6
CiPaw.05G109500 Carya illinoinensis HOM05D006443 ORTHO05D007797 2.0e-139 499.6 362 67.4
Cc11_g16930 Coffea canephora HOM05D006443 ORTHO05D007797 3.4e-139 498.8 360 67.5
Thecc.02G208000 Theobroma cacao HOM05D006443 ORTHO05D007797 3.4e-139 498.8 357 66.7
HanXRQChr08g0207841 Helianthus annuus HOM05D006443 ORTHO05D007797 4.4e-139 498.4 364 67.6
Oeu058924.1 Olea europaea HOM05D006443 ORTHO05D007797 4.4e-139 498.4 358 66.5
PGR119G0512 Punica granatum HOM05D006443 ORTHO05D007797 7.6e-139 497.7 353 67.4
Cpa.g.sc43.60 Carica papaya HOM05D006443 ORTHO05D007797 9.9e-139 497.3 359 66.3
Eucgr.H04637 Eucalyptus grandis HOM05D006443 ORTHO05D007797 2.2e-138 496.1 363 65.8
THA.LOC104807130 Tarenaya hassleriana HOM05D006443 ORTHO05D007797 3.2e-137 492.3 363 67.2
Nn4g22309 Nelumbo nucifera HOM05D006443 ORTHO05D007797 4.2e-137 491.9 357 65.5
SGA_v2.0_scaffold9G04677 Striga asiatica HOM05D006443 ORTHO05D007797 7.8e-136 487.6 376 64.6
CANSAT01G1158 Cannabis sativa HOM05D006443 ORTHO05D007797 1.0e-135 487.3 361 65.1
Sc14g0009070 Simmondsia chinensis HOM05D006443 ORTHO05D007797 2.5e-134 482.6 359 64.6
FAN17G1989 Fragaria x ananassa HOM05D006443 ORTHO05D007797 7.3e-134 481.1 407 60.2
Glyma.18G006200 Glycine max HOM05D006443 ORTHO05D007797 1.3e-133 480.3 363 64.2
Glyma.11G250800 Glycine max HOM05D006443 ORTHO05D007797 2.1e-133 479.6 363 63.9
Phvul.001G262100 Phaseolus vulgaris HOM05D006443 ORTHO05D007797 3.6e-133 478.8 355 65.1
Hund06091 Selenicereus undatus HOM05D006443 ORTHO05D007797 6.2e-133 478.0 356 64.6
Actinidia08069 Actinidia chinensis HOM05D006443 ORTHO05D007797 5.3e-132 474.9 365 64.9
AL1G22970 Arabidopsis lyrata HOM05D006443 ORTHO05D007797 5.3e-132 474.9 358 65.4
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 1.2e-131 473.8 336 68.8
Psat5g096400 Pisum sativum HOM05D006443 ORTHO05D007797 1.2e-131 473.8 355 64.5
Carub.0001s1145 Capsella rubella HOM05D006443 ORTHO05D007797 1.5e-131 473.4 356 64.9
VMungo1383G0397 Vigna mungo HOM05D006443 ORTHO05D007797 3.4e-131 472.2 363 64.2
MBI11_g05329_MAGBIO Magnolia biondii HOM05D006443 ORTHO05D007797 5.8e-131 471.5 357 62.7
CDE05G3615 Ceratophyllum demersum HOM05D006443 ORTHO05D007797 9.9e-131 470.7 351 64.1
AUR62005622 Chenopodium quinoa HOM05D006443 ORTHO05D007797 9.9e-131 470.7 355 63.9
Thhalv10008060m.g Eutrema salsugineum HOM05D006443 ORTHO05D007797 1.7e-130 469.9 360 64.4
BraA09t41778Z Brassica rapa HOM05D006443 ORTHO05D007797 2.9e-130 469.2 357 65.5
Lj6g0022486 Lotus japonicus HOM05D006443 ORTHO05D007797 2.9e-130 469.2 368 63.6
PSO017G6191 Papaver somniferum HOM05D006443 ORTHO05D007797 2.9e-130 469.2 363 63.6
Ca_16457_v3 Cicer arietinum L. HOM05D006443 ORTHO05D007797 3.8e-130 468.8 363 63.6
BolC8t52335H Brassica oleracea HOM05D006443 ORTHO05D007797 8.4e-130 467.6 358 65.4
Medtr3g085290 Medicago truncatula HOM05D006443 ORTHO05D007797 1.1e-129 467.2 364 63.2
TPR.G17786 Trifolium pratense HOM05D006443 ORTHO05D007797 1.1e-129 467.2 363 63.4
BcaB08g37422 Brassica carinata HOM05D006443 ORTHO05D007797 1.4e-129 466.8 358 64.8
Aa31LG1G3790 Aethionema arabicum HOM05D006443 ORTHO05D007797 3.2e-129 465.7 352 65.9
BcaC07g41759 Brassica carinata HOM05D006443 ORTHO05D007797 4.2e-129 465.3 358 65.1
Lalb_Chr11g0075761 Lupinus albus HOM05D006443 ORTHO05D007797 4.2e-129 465.3 351 64.1
PSO478G2155 Papaver somniferum HOM05D006443 ORTHO05D007797 9.3e-129 464.2 363 63.4
CARHR012120 Cardamine hirsuta HOM05D006443 ORTHO05D007797 1.2e-128 463.8 355 64.2
Lj6C827T5 Lonicera japonica HOM05D006443 ORTHO05D007797 4.6e-128 461.8 404 60.6
Sp1g10410 Schrenkiella parvula HOM05D006443 ORTHO05D007797 7.9e-128 461.1 357 64.1
Aqoxy5G03367 Aquilegia oxysepala HOM05D006443 ORTHO05D007797 2.3e-127 459.5 357 63.3
AT1G11780 Arabidopsis thaliana HOM05D006443 ORTHO05D007797 3.9e-127 458.8 357 63.3
Lsat_1_v5_gn_4_56020 Lactuca sativa HOM05D006443 ORTHO05D007797 1.1e-126 457.2 355 63.9
arahy.Tifrunner.gnm1.ann1.DXN1WG Arachis hypogaea HOM05D006443 ORTHO05D007797 1.6e-125 453.4 363 63.1
unitig_747.g21126 Utricularia gibba HOM05D006443 ORTHO05D007797 1.6e-125 453.4 327 67.0
arahy.Tifrunner.gnm1.ann1.P16M7J Arachis hypogaea HOM05D006443 ORTHO05D007797 2.1e-125 453.0 363 62.8
Manes.13G011800 Manihot esculenta HOM05D006443 ORTHO05D007797 2.4e-124 449.5 319 66.8
ClCG11G013630 Citrullus lanatus HOM05D006443 ORTHO05D007797 1.8e-119 433.3 364 59.6
Sed0000233 Sechium edule HOM05D006443 ORTHO05D007797 2.5e-118 429.5 310 65.8
vmacro19384 Vaccinium macrocarpon HOM05D006443 ORTHO05D007797 1.8e-116 423.3 370 58.6
AUR62028926 Chenopodium quinoa HOM05D006443 ORTHO05D007797 1.0e-114 417.5 308 64.9
C08p47970 Brassica napus HOM05D006443 ORTHO05D007797 1.9e-113 413.3 307 66.4
ATR0561G191 Amborella trichopoda HOM05D006443 ORTHO05D007797 5.5e-113 411.8 332 59.3
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 5.1e-111 405.2 307 65.5
EL10Ac6g13506 Beta vulgaris HOM05D006443 ORTHO05D007797 5.0e-106 388.7 316 62.0
Zm00001eb169540 Zea mays HOM05D006443 ORTHO05D007797 2.5e-102 376.3 372 53.5
Rhsim12G0099900 Rhododendron simsii HOM05D006443 ORTHO05D007797 1.8e-100 370.2 262 66.0
CsaV3_5G030250 Cucumis sativus L. HOM05D006443 ORTHO05D007797 1.7e-98 363.6 254 69.7
SEGI_28427 Sequoiadendron giganteum HOM05D006443 ORTHO05D007797 2.3e-95 353.2 355 52.4
Dinv17565 Davidia involucrata HOM05D006443 ORTHO05D007797 6.7e-95 351.7 253 66.0
SMO196G0120 Selaginella moellendorffii HOM05D006443 ORTHO05D007797 7.2e-89 331.6 360 50.3
Mapoly0036s0054 Marchantia polymorpha HOM05D006443 ORTHO05D007797 3.0e-87 326.2 412 45.6
SalBow2G0214 Salvia bowleyana HOM05D006443 ORTHO05D007797 3.0e-87 326.2 242 63.2
SalBow1G6802 Salvia bowleyana HOM05D006443 ORTHO05D007797 5.2e-87 325.5 242 63.2
Os11g0488500 Oryza sativa ssp. japonica HOM05D006443 ORTHO05D007797 1.1e-86 324.3 326 52.1
Pp3c15_20640 Physcomitrium patens HOM05D006443 ORTHO05D007797 1.1e-84 317.8 393 44.0
AagrBONN_evm.TU.Sc2ySwM_228.5822 Anthoceros agrestis HOM05D006443 ORTHO05D007797 4.5e-83 312.4 355 45.9
TAR629G0791 Trochodendron aralioides HOM05D006443 ORTHO05D007797 7.7e-83 311.6 197 72.1
CBR_g32330 Chara braunii HOM05D006443 ORTHO05D007797 4.1e-60 236.1 510 32.0
DCAR_031205 Daucus carota HOM05D006443 ORTHO05D007797 6.1e-56 222.2 202 55.4
Hma1.2p1_0065F.1_g035450 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 8.9e-55 218.4 134 76.1
CSS0019305 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 7.0e-52 208.8 126 75.4
CSS0017614 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 3.5e-51 206.5 126 73.8
DCAR_031204 Daucus carota HOM05D006443 ORTHO05D007797 1.1e-47 194.9 122 71.3
ClCG11G013640 Citrullus lanatus HOM05D006443 ORTHO05D007797 3.4e-38 163.3 100 77.0
Cre06.g278198 Chlamydomonas reinhardtii HOM05D006443 ORTHO05D007797 4.3e-33 146.4 239 35.6
C08p48190 Brassica napus HOM05D006443 ORTHO05D007797 2.1e-27 127.5 92 62.0
BolC8t52352H Brassica oleracea HOM05D006443 ORTHO05D007797 7.8e-27 125.6 92 60.9
MCO14G547 Micromonas commoda HOM05D006443 ORTHO05D007797 9.6e-25 118.6 126 45.2
CSS0022605 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 3.1e-23 113.6 97 56.7
PRCOL_00005324 Prasinoderma coloniale HOM05D006443 ORTHO05D007797 6.9e-23 112.5 161 39.1
FAN12G3107 Fragaria x ananassa HOM05D006443 ORTHO05D007797 3.8e-21 106.7 79 63.3
Cfa001627 Carpinus fangiana HOM05D006443 ORTHO05D007797 2.7e-19 100.5 260 28.8
Rhsim12G0100100 Rhododendron simsii HOM05D006443 ORTHO05D007797 3.3e-17 93.6 101 47.5
C08p46980 Brassica napus HOM05D006443 ORTHO05D007797 5.8e-14 82.8 50 74.0
BolC8t52235H Brassica oleracea HOM05D006443 ORTHO05D007797 5.8e-14 82.8 50 74.0
TAR629G0787 Trochodendron aralioides HOM05D006443 ORTHO05D007797 9.3e-12 75.5 65 52.3
CSS0049531 Camellia sinensis var. sinensis HOM05D001731 ORTHO05D000001 7.9e-11 72.4 50 66.0
Manes.11G015800 Manihot esculenta HOM05D003341 ORTHO05D003603 8.7e-10 68.9 176 29.0
HanXRQChr09g0271981 Helianthus annuus HOM05D003341 ORTHO05D003603 3.7e-08 63.5 116 35.3
VMungo0331G2034 Vigna mungo HOM05D003341 ORTHO05D003603 4.8e-08 63.2 193 28.0
Gorai.011G130100 Gossypium raimondii HOM05D003341 ORTHO05D003603 6.2e-08 62.8 191 28.3
HanXRQChr16g0530111 Helianthus annuus HOM05D003341 ORTHO05D003603 6.2e-08 62.8 153 30.7
Hma1.2p1_1349F.1_g277370 Hydrangea macrophylla HOM05D003341 ORTHO05D003603 2.4e-07 60.8 151 30.5
Thecc.04G156400 Theobroma cacao HOM05D003341 ORTHO05D003603 3.1e-07 60.5 151 29.8
MSTRG.5521 Avicennia marina HOM05D003341 ORTHO05D003603 4.0e-07 60.1 156 27.6
Gohir.D10G118300 Gossypium hirsutum HOM05D003341 ORTHO05D003603 4.0e-07 60.1 191 27.7
ATR0681G237 Amborella trichopoda HOM05D003341 ORTHO05D003603 5.3e-07 59.7 88 39.8
AUR62006332 Chenopodium quinoa HOM05D003341 ORTHO05D003603 5.3e-07 59.7 154 31.2
Gohir.A10G148300 Gossypium hirsutum HOM05D003341 ORTHO05D003603 6.9e-07 59.3 191 27.2
VMungo0331G1094 Vigna mungo HOM05D003341 ORTHO05D003603 6.9e-07 59.3 121 31.4
COL.COLO4_36103 Corchorus olitorius HOM05D003341 ORTHO05D003603 1.2e-06 58.5 196 25.5
Psat5g189880 Pisum sativum HOM05D003341 ORTHO05D003603 1.2e-06 58.5 117 32.5
Aqoxy2G00755 Aquilegia oxysepala HOM05D003341 ORTHO05D003603 1.5e-06 58.2 136 30.1
EL10Ac7g16448 Beta vulgaris HOM05D003341 ORTHO05D003603 1.5e-06 58.2 119 32.8
Migut.I01109 Erythranthe guttata HOM05D003341 ORTHO05D003603 1.5e-06 58.2 83 37.3
TWI14G1117 Tripterygium wilfordii HOM05D003341 ORTHO05D003603 1.5e-06 58.2 85 36.5
Ca_19529_v3 Cicer arietinum L. HOM05D003341 ORTHO05D003603 2.0e-06 57.8 121 30.6
Eucgr.J02616 Eucalyptus grandis HOM05D003341 ORTHO05D003603 2.0e-06 57.8 106 33.0
HanXRQChr09g0266581 Helianthus annuus HOM05D003341 ORTHO05D003603 2.0e-06 57.8 115 33.9
HanXRQChr09g0271961 Helianthus annuus HOM05D003341 ORTHO05D003603 2.0e-06 57.8 114 34.2
HanXRQChr11g0341861 Helianthus annuus HOM05D003341 ORTHO05D003603 2.0e-06 57.8 115 33.9
HanXRQChr16g0530091 Helianthus annuus HOM05D003341 ORTHO05D003603 2.0e-06 57.8 129 31.8
AUR62026370 Chenopodium quinoa HOM05D003341 ORTHO05D003603 2.6e-06 57.4 157 29.9
Ah.08g209790 Amaranthus hybridus HOM05D003341 ORTHO05D003603 3.4e-06 57.0 194 26.8
Phvul.001G131400 Phaseolus vulgaris HOM05D003341 ORTHO05D003603 4.5e-06 56.6 82 36.6
PSO339G1865 Papaver somniferum HOM05D003341 ORTHO05D003603 5.8e-06 56.2 87 34.5
PSO384G1766 Papaver somniferum HOM05D003341 ORTHO05D003603 5.8e-06 56.2 87 34.5
Cfa003499 Carpinus fangiana HOM05D003341 ORTHO05D003603 7.6e-06 55.8 85 35.3
Haze_21126 Corylus avellana HOM05D003341 ORTHO05D003603 7.6e-06 55.8 79 38.0
HanXRQChr09g0271921 Helianthus annuus HOM05D003341 ORTHO05D003603 7.6e-06 55.8 97 32.0
Sc10g0007940 Simmondsia chinensis HOM05D003341 ORTHO05D003603 7.6e-06 55.8 85 34.1
AT3G14160 Arabidopsis thaliana HOM05D003341 ORTHO05D003603 1.0e-05 55.5 85 36.5
HanXRQChr09g0276521 Helianthus annuus HOM05D003341 ORTHO05D003603 1.0e-05 55.5 149 28.9


User provided reference genes

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