Gene: Solyc03g110860.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g110860.3
  • Transcript Identifier Solyc03g110860.3.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 56003183-56007636 : positive

Gene Family Information

  • ID HOM05D000789
  • #Genes/#Species 750/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g110860.3.1
  • uniprot A0A3Q7GDQ0
  • gene_id Solyc03g110860

Descriptions

  • Description Nuclear transcription factor Y subunit C-4 (AHRD V3.3 *** A0A2G3CY59_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009738
ISO
PLAZA Integrative Orthologyabscisic acid-activated signaling pathway AT5G63470
GO:0010029
ISO
PLAZA Integrative Orthologyregulation of seed germination AT5G63470
GO:0010468
ISO
PLAZA Integrative Orthologyregulation of gene expression AT5G63470
GO:0048574
ISO
PLAZA Integrative Orthologylong-day photoperiodism, flowering AT1G54830
GO:0048586
ISO
PLAZA Integrative Orthologyregulation of long-day photoperiodism, flowering AT5G63470
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT1G56170
GO:2000306
ISO
PLAZA Integrative Orthologypositive regulation of photomorphogenesis AT5G63470
GO:2000905
ISO
PLAZA Integrative Orthologynegative regulation of starch metabolic process AT5G63470
GO:0051247
ISO
PLAZA Integrative Orthologypositive regulation of protein metabolic process AT5G63470
GO:0009740
ISO
PLAZA Integrative Orthologygibberellic acid mediated signaling pathway AT5G63470
GO:0048579
ISO
PLAZA Integrative Orthologynegative regulation of long-day photoperiodism, flowering Os03g0251350
GO:0006355
IBA
GOA Databaseregulation of transcription, DNA-templated
GO:0045944
IEA
GOA Databasepositive regulation of transcription by RNA polymerase II

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003712
ISO
PLAZA Integrative Orthologytranscription coregulator activity AT1G54830
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G63470
GO:0046982
IEA
GOA Databaseprotein heterodimerization activity
GO:0046982
IEA
InterProprotein heterodimerization activity
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT1G08970
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT1G56170
GO:0001228
IBA
GOA DatabaseDNA-binding transcription activator activity, RNA polymerase II-specific

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G63470
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G56170
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003958 Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 Histone-fold
Mapman id Description
15.5.49.3 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YC