Gene: AT1G54830

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G54830
  • Transcript Identifier AT1G54830.1
  • Gene Type Coding gene
  • Location Chr1 : 20451672-20452325 : positive

Gene Family Information

  • ID HOM05D000789
  • #Genes/#Species 750/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G54830.1
  • symbol NF-YC3
  • full_name nuclear factor Y%2C subunit C3
  • uniprot Q9ZVL3

Descriptions

  • Description nuclear factor Y, subunit C3
  • Computational description nuclear factor Y, subunit C3 (NF-YC3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C9 (TAIR:AT1G08970.2); Has 1367 Blast hits to 1367 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 368; Plants - 431; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045944
IEA
GOA Databasepositive regulation of transcription by RNA polymerase II
GO:0006355
IBA
Gene Ontologyregulation of transcription, DNA-templated1
GO:0048574
IMP
Gene Ontologylong-day photoperiodism, flowering2
GO:2000306
IMP
Gene Ontologypositive regulation of photomorphogenesis3
GO:0010029
IGI
Gene Ontologyregulation of seed germination4
GO:0009740
IGI
Gene Ontologygibberellic acid mediated signaling pathway4
GO:0009738
IGI
Gene Ontologyabscisic acid-activated signaling pathway4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003712
IDA
Gene Ontologytranscription coregulator activity2
GO:0046982
IEA
Gene Ontologyprotein heterodimerization activity
GO:0046982
IEA
InterProprotein heterodimerization activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0001228
IBA
Gene OntologyDNA-binding transcription activator activity, RNA polymerase II-specific1
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding5
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm Os08g0496500
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
HDA
ISM, IBA
Gene Ontologynucleus1 7
GO:0005829
RCA
Gene Ontologycytosol8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003958 Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 Histone-fold
Mapman id Description
15.5.49.3 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YC