Gene: Solyc01g110950.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g110950.3
  • Transcript Identifier Solyc01g110950.3.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 89749882-89751027 : negative

Gene Family Information

  • ID HOM05D002513
  • #Genes/#Species 271/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g110950.3.1
  • uniprot A0A3Q7ETW0
  • gene_id Solyc01g110950

Descriptions

  • Description DWNN domain, a CCHC-type zinc finger (AHRD V3.3 *-* A0A1P8BBL5_ARATH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IEA
InterPromRNA processing
GO:0016567
IBA
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IEA
InterProprotein ubiquitination
GO:0006511
IBA
GOA Databaseubiquitin-dependent protein catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0061630
IBA
IEA
GOA Databaseubiquitin protein ligase activity
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR025829 Zinc knuckle CX2CX3GHX4C
IPR014891 DWNN domain
IPR033489 E3 ubiquitin-protein ligase RBBP6 family
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR036875 Zinc finger, CCHC-type superfamily
Mapman id Description
16.3.1.2.8 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.ubiquitin ligase component PQT3/MPE1