Gene: Solyc01g107870.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc01g107870.3
- Transcript Identifier Solyc01g107870.3.1
- Gene Type Coding gene
- Location SL4.0ch01 : 87569401-87575526 : positive
Gene Family Information
- ID HOM05D000428
- #Genes/#Species 1201/100
- Phylogenetic origin
- ID ORTHO05D000582
- #Genes/#Species 762/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc01g107870.3.1
- uniprot A0A3Q7FCR4
- gene_id Solyc01g107870
Descriptions
- Description Polyadenylate-binding protein (AHRD V3.3 *** Q9M6E6_TOBAC)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006446 | ISO | PLAZA Integrative Orthology | regulation of translational initiation | AT4G34110 |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT1G49760 |
| GO:1900151 | ISO | PLAZA Integrative Orthology | regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | AT4G34110 |
| GO:0060211 | ISO | PLAZA Integrative Orthology | regulation of nuclear-transcribed mRNA poly(A) tail shortening | AT4G34110 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G49760 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G49760 |
| GO:0008143 | IBA | GOA Database | poly(A) binding | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008266 | IBA | GOA Database | poly(U) RNA binding | |
| GO:0003723 | IBA IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003730 | IBA | GOA Database | mRNA 3'-UTR binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IBA | GOA Database | nucleus | |
| GO:1990904 | IBA | GOA Database | ribonucleoprotein complex | |
| GO:0005829 | IBA | GOA Database | cytosol | |
| GO:0005737 | IEA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR035979 | RNA-binding domain superfamily |
| IPR003954 | RNA recognition motif domain, eukaryote |
| IPR000504 | RNA recognition motif domain |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR006515 | Polyadenylate binding protein, human types 1, 2, 3, 4 |
| IPR002004 | Polyadenylate-binding protein/Hyperplastic disc protein |
| IPR036053 | PABC (PABP) domain |
| Mapman id | Description |
|---|---|
| 17.4.2.5 | Protein biosynthesis.translation initiation.mRNA loading.mRNA poly-A-tail binding factor (PABP) |