Gene: Solyc01g101020.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g101020.4
  • Transcript Identifier Solyc01g101020.4.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 83162583-83165786 : positive

Gene Family Information

  • ID HOM05D001642
  • #Genes/#Species 393/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g101020.4.1
  • uniprot A0A3Q7EPB6
  • gene_id Solyc01g101020

Descriptions

  • Description FACT complex subunit SPT16 (AHRD V3.3 *** A0A2G3AVF8_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006260
IEA
GOA DatabaseDNA replication
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0032968
IBA
GOA Databasepositive regulation of transcription elongation from RNA polymerase II promoter
GO:0006368
IBA
GOA Databasetranscription elongation from RNA polymerase II promoter
GO:0034724
IBA
GOA DatabaseDNA replication-independent nucleosome organization
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT4G10710

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031491
IBA
GOA Databasenucleosome binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035101
IBA
IEA
GOA DatabaseFACT complex
GO:0035101
IEA
InterProFACT complex
GO:0005694
IEA
GOA Databasechromosome
GO:0005634
IEA
GOA Databasenucleus
GO:0000791
ISO
PLAZA Integrative Orthologyeuchromatin AT4G10710
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT4G10710

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011993 PH-like domain superfamily
IPR033825 FACT complex subunit Spt16, peptidase M24-like domain
IPR036005 Creatinase/aminopeptidase-like
IPR040258 FACT complex subunit Spt16
IPR013953 FACT complex subunit Spt16 domain
IPR029148 FACT complex subunit Spt16, N-terminal lobe domain
IPR013719 Domain of unknown function DUF1747
IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal
IPR000994 Peptidase M24
Mapman id Description
12.2.2.1 Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.component SPT16