Gene: Solyc01g090670.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g090670.3
  • Transcript Identifier Solyc01g090670.3.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 76554044-76563981 : positive

Gene Family Information

  • ID HOM05D005846
  • #Genes/#Species 134/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g090670.3.1
  • uniprot A0A3Q7EJY5
  • gene_id Solyc01g090670

Descriptions

  • Description nuclear pore complex protein NUP62 (AHRD V3.3 *-* A0A2I4GEZ1_9ROSI)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015031
IEA
GOA Databaseprotein transport
GO:0006405
IBA
GOA DatabaseRNA export from nucleus
GO:0006606
IBA
GOA Databaseprotein import into nucleus
GO:0010930
ISO
PLAZA Integrative Orthologynegative regulation of auxin mediated signaling pathway AT2G45000

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0017056
IBA
IEA
GOA Databasestructural constituent of nuclear pore
GO:0017056
IEA
InterProstructural constituent of nuclear pore
GO:0005543
IBA
GOA Databasephospholipid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G45000

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005643
IEA
GOA Databasenuclear pore
GO:0005643
IEA
InterPronuclear pore
GO:0044613
IBA
GOA Databasenuclear pore central transport channel
GO:0005635
ISO
PLAZA Integrative Orthologynuclear envelope AT2G45000
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G45000
GO:0034399
ISO
PLAZA Integrative Orthologynuclear periphery AT2G45000

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR026010 Nucleoporin NSP1/NUP62
IPR007758 Nucleoporin, NSP1-like, C-terminal
Mapman id Description
23.5.1.1.6.2 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP62)