Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 9.1e-174 614.8 759 100.0
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 1.2e-144 518.1 781 77.0
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 2.5e-107 394.0 274 88.7
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 7.9e-101 372.5 210 93.8
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 3.8e-95 353.6 271 81.5
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 6.4e-95 352.8 262 84.7
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 1.2e-93 348.6 265 77.4
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 1.6e-93 348.2 275 80.0
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 2.1e-93 347.8 268 79.5
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 1.3e-92 345.1 206 85.9
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 3.0e-92 344.0 209 85.2
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 3.9e-92 343.6 262 82.8
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 3.9e-92 343.6 278 77.3
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 3.3e-91 340.5 210 83.8
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 4.3e-91 340.1 274 74.8
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 1.3e-90 338.6 197 90.9
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 2.1e-90 337.8 209 83.3
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 2.1e-90 337.8 266 77.4
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 2.1e-90 337.8 273 72.9
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 2.8e-90 337.4 277 71.8
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 3.7e-90 337.0 209 82.3
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 6.2e-90 336.3 208 83.2
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 8.2e-90 335.9 278 70.9
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.1e-89 335.5 208 83.2
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.1e-89 335.5 208 83.2
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 1.1e-89 335.5 208 81.2
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 1.4e-89 335.1 214 81.8
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.8e-89 334.7 208 84.1
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 1.8e-89 334.7 271 80.4
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 4.0e-89 333.6 208 80.8
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 4.0e-89 333.6 208 80.8
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 4.0e-89 333.6 270 68.1
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 4.0e-89 333.6 207 83.6
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 5.3e-89 333.2 210 82.4
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 9.0e-89 332.4 208 81.2
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 9.0e-89 332.4 277 77.6
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 9.0e-89 332.4 208 82.2
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 9.0e-89 332.4 209 81.8
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.2e-88 332.0 208 83.2
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 1.2e-88 332.0 208 81.2
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 1.5e-88 331.6 209 81.3
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 2.0e-88 331.3 215 81.4
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.0e-88 331.3 278 74.1
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 2.0e-88 331.3 269 76.2
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 4.5e-88 330.1 209 79.9
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 5.8e-88 329.7 207 80.7
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.0e-87 328.9 209 78.9
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.0e-87 328.9 209 78.9
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 1.0e-87 328.9 209 79.4
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.0e-87 328.9 275 74.9
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 1.3e-87 328.6 209 81.3
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.3e-87 328.6 208 82.2
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.3e-87 328.6 209 78.9
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.3e-87 328.6 209 78.9
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 1.7e-87 328.2 200 84.5
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 2.2e-87 327.8 209 81.3
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.2e-87 327.8 209 78.9
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 2.2e-87 327.8 206 81.6
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.9e-87 327.4 278 74.1
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.9e-87 327.4 278 74.1
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 6.5e-87 326.2 209 80.9
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 8.4e-87 325.9 209 80.9
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 8.4e-87 325.9 208 79.3
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.1e-86 325.5 284 75.7
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 1.9e-86 324.7 209 79.4
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.9e-86 324.7 209 78.0
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 7.1e-86 322.8 209 80.9
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 9.3e-86 322.4 208 79.8
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 1.6e-85 321.6 278 71.9
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 1.6e-85 321.6 200 83.0
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 2.1e-85 321.2 206 79.6
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 2.1e-85 321.2 211 80.1
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 2.7e-85 320.9 208 78.8
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 4.6e-85 320.1 209 80.4
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 4.6e-85 320.1 279 68.8
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 1.0e-84 318.9 208 78.8
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 1.8e-84 318.2 209 79.4
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 3.9e-84 317.0 209 79.9
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 3.9e-84 317.0 209 79.9
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 3.9e-84 317.0 199 82.9
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 9.7e-83 312.4 210 77.6
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 2.2e-82 311.2 209 76.6
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 3.7e-82 310.5 202 79.2
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 4.1e-81 307.0 256 75.0
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 5.3e-81 306.6 195 81.5
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 5.3e-81 306.6 248 68.5
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 4.5e-80 303.5 207 75.4
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 5.9e-80 303.1 207 75.4
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.9e-78 298.1 287 58.2
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 3.2e-78 297.4 287 59.2
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 4.2e-78 297.0 178 85.4
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 5.5e-78 296.6 199 76.4
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 2.0e-75 288.1 189 78.8
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 2.5e-75 287.7 208 70.2
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 3.3e-75 287.3 178 81.5
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 4.3e-75 287.0 179 81.6
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 2.5e-70 271.2 199 67.8
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 9.4e-70 269.2 189 70.9
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 2.1e-69 268.1 206 66.5
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.0e-68 265.8 195 69.7
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 5.7e-67 260.0 225 69.3
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 2.2e-66 258.1 200 69.0
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 2.8e-66 257.7 224 63.4
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 2.1e-61 241.5 190 68.9
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 5.2e-60 236.9 154 79.9
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 3.3e-59 234.2 176 71.6
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 2.6e-56 224.6 191 63.4
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 6.8e-44 183.3 149 62.4
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 3.9e-31 141.0 114 59.6
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 1.0e-28 132.9 93 72.0
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 6.8e-28 130.2 189 40.2
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.5e-27 129.0 103 70.9
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 1.2e-24 119.4 77 80.5
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 5.0e-23 114.0 82 74.4
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 1.6e-21 109.0 218 33.0
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 8.1e-21 106.7 75 76.0
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 8.1e-21 106.7 64 82.8
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.1e-20 106.3 106 58.5
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 2.6e-19 101.7 180 39.4
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 1.7e-18 99.0 56 85.7
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 4.9e-18 97.4 107 47.7
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 2.4e-17 95.1 168 38.7
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 2.7e-16 91.7 63 74.6
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.5e-16 91.3 55 76.4
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 3.9e-15 87.8 62 67.7
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 1.5e-14 85.9 95 47.4
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 1.5e-14 85.9 95 47.4
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 1.9e-14 85.5 159 39.0
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 9.5e-14 83.2 63 66.7
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 1.5e-11 75.9 52 69.2
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 5.4e-09 67.4 36 88.9
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 3.5e-08 64.7 56 67.9
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 3.0e-07 61.6 149 26.8
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 8.6e-07 60.1 35 80.0


User provided reference genes

Program Settings