Gene: Solyc01g006040.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc01g006040.3
- Transcript Identifier Solyc01g006040.3.1
- Gene Type Coding gene
- Location SL4.0ch01 : 727798-737194 : negative
Gene Family Information
- ID HOM05D001240
- #Genes/#Species 503/100
- Phylogenetic origin
- ID ORTHO05D002450
- #Genes/#Species 286/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc01g006040.3.1
- uniprot A0A3Q7E8Q2
- gene_id Solyc01g006040
Descriptions
- Description E3 ubiquitin protein ligase (AHRD V3.3 *** A0A2I4FSG3_9ROSI)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010390 | IEA | GOA Database | histone monoubiquitination | |
| GO:0010390 | IEA | InterPro | histone monoubiquitination | |
| GO:0016567 | IEA | GOA Database | protein ubiquitination | |
| GO:0006325 | IEA | GOA Database | chromatin organization | |
| GO:0010162 | ISO | PLAZA Integrative Orthology | seed dormancy process | AT1G55250 |
| GO:0045087 | ISO | PLAZA Integrative Orthology | innate immune response | AT1G55250 |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT1G55250 |
| GO:0009965 | ISO | PLAZA Integrative Orthology | leaf morphogenesis | AT1G55250 |
| GO:0033523 | ISO | PLAZA Integrative Orthology | histone H2B ubiquitination | AT1G55250 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004842 | IEA | GOA Database | ubiquitin-protein transferase activity | |
| GO:0004842 | IEA | InterPro | ubiquitin-protein transferase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0042803 | ISO | PLAZA Integrative Orthology | protein homodimerization activity | AT1G55250 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013956 | E3 ubiquitin ligase Bre1 |
| Mapman id | Description |
|---|---|
| 19.2.2.1.4.3.2 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-HC-class E3 ligase |