Gene: AT1G55250

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G55250
  • Transcript Identifier AT1G55250.5
  • Gene Type Coding gene
  • Location Chr1 : 20607214-20612302 : positive

Gene Family Information

  • ID HOM05D001240
  • #Genes/#Species 503/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G55250.5
  • symbol HUB2
  • uniprot Q9C895

Descriptions

  • Description histone mono-ubiquitination 2
  • Computational description histone mono-ubiquitination 2 (HUB2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: histone mono-ubiquitination 1 (TAIR:AT2G44950.1); Has 74071 Blast hits to 42895 proteins in 2604 species: Archae - 973; Bacteria - 11117; Metazoa - 35835; Fungi - 6236; Plants - 4620; Viruses - 230; Other Eukaryotes - 15060 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045087
IGI
Gene Ontologyinnate immune response1
GO:0010390
IEA
GOA Databasehistone monoubiquitination
GO:0010390
IMP
Gene Ontologyhistone monoubiquitination2
GO:0010390
IEA
InterProhistone monoubiquitination
GO:0006325
IEA
GOA Databasechromatin organization
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0033523
IMP
Gene Ontologyhistone H2B ubiquitination3
GO:0010228
IMP
Gene Ontologyvegetative to reproductive phase transition of meristem3
GO:0009965
IMP
Gene Ontologyleaf morphogenesis4
GO:0010162
IMP
Gene Ontologyseed dormancy process2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
IEA
Gene Ontologyubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0042803
IPI
Gene Ontologyprotein homodimerization activity3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR013956 E3 ubiquitin ligase Bre1
IPR001841 Zinc finger, RING-type
Mapman id Description
19.2.2.1.4.3.2 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-HC-class E3 ligase