Gene: SGA_v2.0_scaffold2G00921

General Information

Structural Information

Species Striga asiatica
Gene Identifier SGA_v2.0_scaffold2G00921
Transcript Identifier SGA_v2.0_scaffold2T00921
Gene Type Coding gene
Location scaffold2 : 1323608-1327755 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000327
#Genes/#Species 1418/97
Phylogenetic origin

ID ORTHO05D000218
#Genes/#Species 1364/97
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

Descriptions

Short descriptions
Ortholog descriptions

product RING/U-box superfamily protein

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016567	IEA	InterPro	protein ubiquitination
GO:0140547	ISO	PLAZA Integrative Orthology	acquisition of seed longevity	AT2G26130
GO:0000209	ISO	PLAZA Integrative Orthology	protein polyubiquitination	AT2G26130
GO:0010431	ISO	PLAZA Integrative Orthology	seed maturation	AT2G26130
GO:0006511	ISO	PLAZA Integrative Orthology	ubiquitin-dependent protein catabolic process	AT2G26130
GO:0009788	ISO	PLAZA Integrative Orthology	negative regulation of abscisic acid-activated signaling pathway	AT2G26130
GO:0010476	ISO	PLAZA Integrative Orthology	gibberellin mediated signaling pathway	AT2G26130

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0004523	IEA	InterPro	RNA-DNA hybrid ribonuclease activity
GO:0004842	IEA	InterPro	ubiquitin-protein transferase activity
GO:0061630	ISO	PLAZA Integrative Orthology	ubiquitin protein ligase activity	AT3G43750
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT3G43750

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT2G21420
GO:0009705	ISO	PLAZA Integrative Orthology	plant-type vacuole membrane	AT2G26130
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT3G43750
GO:0005886	ISO	PLAZA Integrative Orthology	plasma membrane	AT2G26130

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR002867	IBR domain
IPR036397	Ribonuclease H superfamily
IPR012337	Ribonuclease H-like superfamily
IPR002156	Ribonuclease H domain
IPR031127	E3 ubiquitin ligase RBR family

Mapman id	Description
19.2.2.1.4.4.4	Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.plant-specific E3 ubiquitin ligase (RSL/RFA)