Gene: AT2G26130

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G26130
  • Transcript Identifier AT2G26130.1
  • Gene Type Coding gene
  • Location Chr2 : 11127134-11128476 : positive

Gene Family Information

  • ID HOM05D000327
  • #Genes/#Species 1418/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G26130.1
  • Alias RSL1,Ring finger of Seed Longevity 1
  • uniprot F4ITM1

Descriptions

  • Description RING/U-box protein with C6HC-type zinc finger
  • Computational description RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT2G26135.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IDA
Gene Ontologyprotein ubiquitination1
GO:0016567
IEA
InterProprotein ubiquitination
GO:0000209
IBA
GOA Databaseprotein polyubiquitination
GO:0000209
IDA
Gene Ontologyprotein polyubiquitination2
GO:0032436
IBA
GOA Databasepositive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0006511
IBA
GOA Databaseubiquitin-dependent protein catabolic process
GO:0006511
IDA
Gene Ontologyubiquitin-dependent protein catabolic process2
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0009788
IMP
Gene Ontologynegative regulation of abscisic acid-activated signaling pathway2
GO:0140547
IMP
Gene Ontologyacquisition of seed longevity1
GO:0010476
IMP
Gene Ontologygibberellin mediated signaling pathway1
GO:0010431
IMP
Gene Ontologyseed maturation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0004523
IEA
Gene OntologyRNA-DNA hybrid ribonuclease activity
GO:0004523
IEA
InterProRNA-DNA hybrid ribonuclease activity
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0031624
IBA
GOA Databaseubiquitin conjugating enzyme binding
GO:0061630
IBA
GOA Databaseubiquitin protein ligase activity
GO:0061630
IDA
Gene Ontologyubiquitin protein ligase activity1
GO:0016740
IEA
GOA Databasetransferase activity
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IBA
GOA Databasecytoplasm
GO:0000151
IBA
GOA Databaseubiquitin ligase complex
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0009705
IDA
Gene Ontologyplant-type vacuole membrane3
GO:0005886
IDA
Gene Ontologyplasma membrane2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR002867 IBR domain
IPR036397 Ribonuclease H superfamily
IPR031127 E3 ubiquitin ligase RBR family
IPR002156 Ribonuclease H domain
Mapman id Description
19.2.2.1.4.4.4 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.plant-specific E3 ubiquitin ligase (RSL/RFA)