Gene: SGA_v2.0_scaffold27G11680

General Information

Structural Information

  • Species Striga asiatica
  • Gene Identifier SGA_v2.0_scaffold27G11680
  • Transcript Identifier SGA_v2.0_scaffold27T11680
  • Gene Type Coding gene
  • Location scaffold27 : 2395575-2397931 : positive

Gene Family Information

  • ID HOM05D002682
  • #Genes/#Species 256/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

Descriptions

  • product Arginine/serine-rich splicing factor, putative
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT4G31580

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT1G23860
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G24590
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G24590

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G23860
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT4G31580
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G24590
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G24590

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036875 Zinc finger, CCHC-type superfamily
IPR000504 RNA recognition motif domain
IPR001878 Zinc finger, CCHC-type
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.2.6.4 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (RSZ21/22)