Gene: Pp3c6_12900

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c6_12900
  • Transcript Identifier Pp3c6_12900V3.1
  • Gene Type Coding gene
  • Location Chr06 : 8223465-8228543 : positive

Gene Family Information

  • ID HOM05D000319
  • #Genes/#Species 1449/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c6_12900V3.1
  • pacid 32977853
  • alias Pp1s177_52V6
  • alias Phpat.006G047100
  • alias Phypa_192315
  • uniprot A9T788

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042752
ISO
PLAZA Integrative Orthologyregulation of circadian rhythm AT4G02570
GO:0010265
ISO
PLAZA Integrative OrthologySCF complex assembly AT4G02570
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT4G02570
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT4G02570
GO:0009867
ISO
PLAZA Integrative Orthologyjasmonic acid mediated signaling pathway AT4G02570
GO:0006511
IEA
GOA Databaseubiquitin-dependent protein catabolic process
GO:0006511
IEA
InterProubiquitin-dependent protein catabolic process
GO:0009753
ISO
PLAZA Integrative Orthologyresponse to jasmonic acid AT4G02570
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT4G02570
GO:0010087
ISO
PLAZA Integrative Orthologyphloem or xylem histogenesis AT4G02570
GO:0016567
IBA
GOA Databaseprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G02570
GO:0031625
IBA
IEA
GOA Databaseubiquitin protein ligase binding
GO:0031625
IEA
InterProubiquitin protein ligase binding
GO:0004842
IBA
GOA Databaseubiquitin-protein transferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G02570
GO:0005819
ISO
PLAZA Integrative Orthologyspindle AT4G02570
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT4G02570
GO:0000151
ISO
PLAZA Integrative Orthologyubiquitin ligase complex AT4G02570
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G02570
GO:0009524
ISO
PLAZA Integrative Orthologyphragmoplast AT4G02570
GO:0000794
ISO
PLAZA Integrative Orthologycondensed nuclear chromosome AT4G02570
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT1G02980
GO:0031461
IBA
GOA Databasecullin-RING ubiquitin ligase complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR045093 Cullin
IPR016159 Cullin repeat-like-containing domain superfamily
IPR036317 Cullin homology domain superfamily
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR019559 Cullin protein, neddylation domain
IPR001373 Cullin, N-terminal
IPR036390 Winged helix DNA-binding domain superfamily
IPR016158 Cullin homology domain
Mapman id Description
19.2.2.8.1.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.scaffold component CUL1/CUL2