Gene: Pp3c5_15600

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c5_15600
  • Transcript Identifier Pp3c5_15600V3.2
  • Gene Type Coding gene
  • Location Chr05 : 10911573-10915210 : positive

Gene Family Information

  • ID HOM05D001283
  • #Genes/#Species 488/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c5_15600V3.2
  • pacid 32956099
  • alias Phypa_88384
  • alias Pp1s169_63V6
  • alias Phpat.005G059400
  • uniprot A0A2K1KJU2

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress AT3G55460

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT3G55460
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G18810
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G55460

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
IBA
GOA Databasenuclear speck
GO:0005737
IBA
GOA Databasecytoplasm
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G18810
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G13570
GO:0035061
ISO
PLAZA Integrative Orthologyinterchromatin granule AT1G55310
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G55310
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT1G55310

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.2.6.2 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (SCL28/30/33)