Gene: AT5G18810

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G18810
  • Transcript Identifier AT5G18810.1
  • Gene Type Coding gene
  • Location Chr5 : 6268925-6271158 : negative

Gene Family Information

  • ID HOM05D001283
  • #Genes/#Species 488/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G18810.1
  • symbol SCL28
  • Alias At-SCL28,SC35-like splicing factor 28
  • uniprot Q1PDV2

Descriptions

  • Description SC35-like splicing factor 28
  • Computational description SC35-like splicing factor 28 (SCL28); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A (TAIR:AT3G13570.1); Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000398
IBA
TAS
Gene OntologymRNA splicing, via spliceosome1 2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding2
GO:0005515
IPI
Gene Ontologyprotein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
IEA
GOA Databasenuclear speck
GO:0016607
IDA
IBA
Gene Ontologynuclear speck2 4
GO:0005634
IDA
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005737
IBA
Gene Ontologycytoplasm2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.2.6.2 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (SCL28/30/33)