Gene: Pp3c26_6450
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c26_6450
- Transcript Identifier Pp3c26_6450V3.1
- Gene Type Coding gene
- Location Chr26 : 3485630-3492421 : positive
Gene Family Information
- ID HOM05D001522
- #Genes/#Species 417/99
- Phylogenetic origin
- ID ORTHO05D001547
- #Genes/#Species 391/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c26_6450V3.1
- pacid 32918758
- alias Pp1s256_41V6
- alias Phypa_196123
- alias Phpat.026G024100
- uniprot Q8SBD4
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048481 | ISO | PLAZA Integrative Orthology | plant ovule development | AT1G68990 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT1G68990 |
| GO:0009860 | ISO | PLAZA Integrative Orthology | pollen tube growth | AT1G68990 |
| GO:0006390 | IBA | GOA Database | mitochondrial transcription | |
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003899 | IBA IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G24120 |
| GO:0034062 | ISO | PLAZA Integrative Orthology | 5'-3' RNA polymerase activity | AT5G15700 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042651 | ISO | PLAZA Integrative Orthology | thylakoid membrane | AT5G15700 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT2G24120 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G15700 |
| GO:0034245 | IBA | GOA Database | mitochondrial DNA-directed RNA polymerase complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR029262 | DNA-directed RNA polymerase, N-terminal |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR024075 | DNA-directed RNA polymerase, helix hairpin domain superfamily |
| IPR037159 | DNA-directed RNA polymerase, N-terminal domain superfamily |
| IPR002092 | DNA-directed RNA polymerase, phage-type |
| Mapman id | Description |
|---|---|
| 15.6.1.1 | RNA biosynthesis.organelle machinery.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) |