Gene: AT2G24120

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G24120
  • Transcript Identifier AT2G24120.1
  • Gene Type Coding gene
  • Location Chr2 : 10249358-10254530 : negative

Gene Family Information

  • ID HOM05D001522
  • #Genes/#Species 417/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G24120.1
  • symbol SCA3
  • Alias PDE319,PIGMENT DEFECTIVE 319
  • full_name SCABRA 3
  • uniprot O24600

Descriptions

  • Description DNA/RNA polymerases superfamily protein
  • Computational description SCABRA 3 (SCA3); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: male gametophyte defective 3 (TAIR:AT1G68990.1); Has 1315 Blast hits to 1296 proteins in 334 species: Archae - 0; Bacteria - 38; Metazoa - 134; Fungi - 224; Plants - 204; Viruses - 139; Other Eukaryotes - 576 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
Gene Ontologytranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0006390
IBA
Gene Ontologymitochondrial transcription1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003899
IBA
IEA
Gene OntologyDNA-directed 5'-3' RNA polymerase activity1
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity
GO:0003677
IEA
Gene OntologyDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0005739
IDA
GOA Databasemitochondrion
GO:0005739
HDA
Gene Ontologymitochondrion3
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
ISM
Gene Ontologychloroplast
GO:0034245
IBA
Gene Ontologymitochondrial DNA-directed RNA polymerase complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029262 DNA-directed RNA polymerase, N-terminal
IPR002092 DNA-directed RNA polymerase, phage-type
IPR024075 DNA-directed RNA polymerase, helix hairpin domain superfamily
IPR037159 DNA-directed RNA polymerase, N-terminal domain superfamily
IPR043502 DNA/RNA polymerase superfamily
Mapman id Description
15.6.1.1 RNA biosynthesis.organelle machinery.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP)