Gene: Pp3c14_23520

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c14_23520
  • Transcript Identifier Pp3c14_23520V3.15
  • Gene Type Coding gene
  • Location Chr14 : 15059315-15063757 : negative

Gene Family Information

  • ID HOM05D000627
  • #Genes/#Species 910/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c14_23520V3.15
  • pacid 32961569
  • alias Phypa_164436
  • alias Phpat.014G091800
  • alias Pp1s69_37V6
  • uniprot A0A2K1JJ17

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009638
ISO
PLAZA Integrative Orthologyphototropism AT2G43010
GO:0010029
ISO
PLAZA Integrative Orthologyregulation of seed germination AT2G20180
GO:0010100
ISO
PLAZA Integrative Orthologynegative regulation of photomorphogenesis AT2G20180
GO:0090229
ISO
PLAZA Integrative Orthologynegative regulation of red or far-red light signaling pathway Os01g0286100
GO:0010161
ISO
PLAZA Integrative Orthologyred light signaling pathway AT2G20180
GO:0009693
ISO
PLAZA Integrative Orthologyethylene biosynthetic process AT3G59060
GO:0090351
ISO
PLAZA Integrative Orthologyseedling development AT4G00050
GO:0006783
ISO
PLAZA Integrative Orthologyheme biosynthetic process AT2G20180
GO:0080113
ISO
PLAZA Integrative Orthologyregulation of seed growth Os05g0139100
GO:0009416
ISO
PLAZA Integrative Orthologyresponse to light stimulus AT4G00050
GO:1990110
ISO
PLAZA Integrative Orthologycallus formation AT2G46970
GO:0031539
ISO
PLAZA Integrative Orthologypositive regulation of anthocyanin metabolic process AT1G09530
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT4G36930
GO:0009639
ISO
PLAZA Integrative Orthologyresponse to red or far red light AT1G09530
GO:0010114
ISO
PLAZA Integrative Orthologyresponse to red light AT4G36930
GO:0010099
ISO
PLAZA Integrative Orthologyregulation of photomorphogenesis AT2G20180
GO:0009585
ISO
PLAZA Integrative Orthologyred, far-red light phototransduction AT3G59060
GO:0006351
ISO
PLAZA Integrative Orthologytranscription, DNA-templated AT4G00050
GO:0007165
ISO
PLAZA Integrative Orthologysignal transduction AT1G09530
GO:0009740
ISO
PLAZA Integrative Orthologygibberellic acid mediated signaling pathway AT1G09530
GO:0080006
ISO
PLAZA Integrative Orthologyinternode patterning Os03g0782500
GO:0010928
ISO
PLAZA Integrative Orthologyregulation of auxin mediated signaling pathway AT3G59060
GO:0010600
ISO
PLAZA Integrative Orthologyregulation of auxin biosynthetic process AT3G59060
GO:0010244
ISO
PLAZA Integrative Orthologyresponse to low fluence blue light stimulus by blue low-fluence system AT3G59060
GO:0010047
ISO
PLAZA Integrative Orthologyfruit dehiscence AT5G67110
GO:0009704
ISO
PLAZA Integrative Orthologyde-etiolation AT4G00050
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0015995
ISO
PLAZA Integrative Orthologychlorophyll biosynthetic process AT2G20180
GO:0010187
ISO
PLAZA Integrative Orthologynegative regulation of seed germination AT4G00050
GO:0009637
ISO
PLAZA Integrative Orthologyresponse to blue light AT4G00050
GO:0048440
ISO
PLAZA Integrative Orthologycarpel development AT4G36930
GO:0010218
ISO
PLAZA Integrative Orthologyresponse to far red light AT4G00050
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated Os03g0782500
GO:0010017
ISO
PLAZA Integrative Orthologyred or far-red light signaling pathway AT1G09530
GO:0042548
ISO
PLAZA Integrative Orthologyregulation of photosynthesis, light reaction AT1G09530
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development AT4G36930
GO:0009567
ISO
PLAZA Integrative Orthologydouble fertilization forming a zygote and endosperm AT4G00050
GO:0009686
ISO
PLAZA Integrative Orthologygibberellin biosynthetic process AT2G20180
GO:0009641
ISO
PLAZA Integrative Orthologyshade avoidance AT2G46970
GO:0007623
ISO
PLAZA Integrative Orthologycircadian rhythm AT1G09530
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT4G00050
GO:0009959
ISO
PLAZA Integrative Orthologynegative gravitropism AT4G00050

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010313
ISO
PLAZA Integrative Orthologyphytochrome binding AT2G20180
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G00050
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT1G09530
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT1G09530
GO:0003700
IEA
GOA DatabaseDNA-binding transcription factor activity
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0046983
IEA
GOA Databaseprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding AT5G61270
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT1G09530
GO:1990841
ISO
PLAZA Integrative Orthologypromoter-specific chromatin binding AT3G59060

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT5G61270
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G00050
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G09530

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 Helix-loop-helix DNA-binding domain superfamily
IPR044273 Transcription factor PIF3-like
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)