Gene: AT2G20180

General Information

Computational description phytochrome interacting factor 3-like 5 (PIL5); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G28800.1); Has 4635 Blast hits to 4615 proteins in 348 species: Archae - 0; Bacteria - 26; Metazoa - 878; Fungi - 251; Plants - 3376; Viruses - 2; Other Eukaryotes - 102 (source: NCBI BLink).

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0090229	ISO	PLAZA Integrative Orthology	negative regulation of red or far-red light signaling pathway	Os03g0782500
GO:0080006	ISO	PLAZA Integrative Orthology	internode patterning	Os03g0782500
GO:0045893	ISO	PLAZA Integrative Orthology	positive regulation of transcription, DNA-templated	Os03g0782500
GO:0006783	IMP	Gene Ontology	heme biosynthetic process	1
GO:0010161	IDA	Gene Ontology	red light signaling pathway	2
GO:0010100	IMP	Gene Ontology	negative regulation of photomorphogenesis	2
GO:0009740	IMP	Gene Ontology	gibberellic acid mediated signaling pathway	3
GO:0006355	IMP	Gene Ontology	regulation of transcription, DNA-templated	4
GO:0009959	IMP TAS	Gene Ontology	negative gravitropism	5 6
GO:0009686	IMP	Gene Ontology	gibberellin biosynthetic process	6
GO:0010099	TAS	Gene Ontology	regulation of photomorphogenesis	5
GO:0010029	TAS	Gene Ontology	regulation of seed germination	5
GO:0010187	IMP, IGI	Gene Ontology	negative regulation of seed germination	7 8
GO:0015995	IMP	Gene Ontology	chlorophyll biosynthetic process	9

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003677	IEA	GOA Database	DNA binding
GO:0003677	IDA	Gene Ontology	DNA binding	4
GO:0046983	IEA	Gene Ontology	protein dimerization activity
GO:0046983	IEA	InterPro	protein dimerization activity
GO:0042802	IPI	Gene Ontology	identical protein binding	10
GO:0003700	IDA ISS TAS	Gene Ontology	DNA-binding transcription factor activity	5 11 12
GO:0010313	IDA	Gene Ontology	phytochrome binding	7
GO:0005515	IPI	Gene Ontology	protein binding	9

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	IEA	GOA Database	nucleus
GO:0005634	IDA ISM, IBA	Gene Ontology	nucleus	7 13

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638	Helix-loop-helix DNA-binding domain superfamily
IPR031066	Basic helix-loop-helix (bHLH) transcription factors ALC-like, plant

Mapman id	Description
15.5.30	RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)
26.1.1.7	External stimuli response.light.red/far red light.transcriptional regulator (PIF)