Gene: AT2G43010

General Information

Computational description phytochrome interacting factor 4 (PIF4); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 6 (TAIR:AT3G59060.1); Has 4545 Blast hits to 4539 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 192; Plants - 3373; Viruses - 2; Other Eukaryotes - 39 (source: NCBI BLink).

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009638	IMP	Gene Ontology	phototropism	1
GO:0090229	ISO	PLAZA Integrative Orthology	negative regulation of red or far-red light signaling pathway	Os03g0782500
GO:0080006	ISO	PLAZA Integrative Orthology	internode patterning	Os03g0782500
GO:0045893	ISO	PLAZA Integrative Orthology	positive regulation of transcription, DNA-templated	Os03g0782500
GO:0010017	IEA	GOA Database	red or far-red light signaling pathway
GO:0010017	IMP	Gene Ontology	red or far-red light signaling pathway	2
GO:0009585	IEA	GOA Database	red, far-red light phototransduction
GO:0006355	IEA	GOA Database	regulation of transcription, DNA-templated
GO:0010600	IDA, IMP	Gene Ontology	regulation of auxin biosynthetic process	3 4
GO:0010244	IDA	Gene Ontology	response to low fluence blue light stimulus by blue low-fluence system	5
GO:0010928	IDA	Gene Ontology	regulation of auxin mediated signaling pathway	3
GO:0009704	IMP	Gene Ontology	de-etiolation	6
GO:0010161	IGI	Gene Ontology	red light signaling pathway	2

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0046983	IEA	Gene Ontology	protein dimerization activity
GO:0046983	IEA	InterPro	protein dimerization activity
GO:0003677	IEA	GOA Database	DNA binding
GO:0003677	IDA	Gene Ontology	DNA binding	2
GO:1990841	IDA	GOA Database	promoter-specific chromatin binding
GO:1990841	IPI	Gene Ontology	promoter-specific chromatin binding	7
GO:0005515	IPI	Gene Ontology	protein binding	2
GO:0003700	ISS	Gene Ontology	DNA-binding transcription factor activity	8

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	IEA	GOA Database	nucleus
GO:0005634	IDA ISM, IBA	Gene Ontology	nucleus	2 9

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
IPR031066	Basic helix-loop-helix (bHLH) transcription factors ALC-like, plant
IPR036638	Helix-loop-helix DNA-binding domain superfamily

Mapman id	Description
15.5.30	RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)
26.1.1.7	External stimuli response.light.red/far red light.transcriptional regulator (PIF)