Gene: Pp3c14_10280

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c14_10280
  • Transcript Identifier Pp3c14_10280V3.2
  • Gene Type Coding gene
  • Location Chr14 : 6533859-6541636 : negative

Gene Family Information

  • ID HOM05D000917
  • #Genes/#Species 655/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c14_10280V3.2
  • pacid 32962845
  • alias Phpat.014G037200
  • alias Phypa_201067
  • alias Pp1s509_20V6
  • uniprot A0A2K1JH68

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0040029
ISO
PLAZA Integrative Orthologyregulation of gene expression, epigenetic AT1G54490
GO:0010087
ISO
PLAZA Integrative Orthologyphloem or xylem histogenesis AT1G54490
GO:0031087
ISO
PLAZA Integrative Orthologydeadenylation-independent decapping of nuclear-transcribed mRNA AT1G54490
GO:0000967
ISO
PLAZA Integrative OrthologyrRNA 5'-end processing AT1G75660
GO:0009873
ISO
PLAZA Integrative Orthologyethylene-activated signaling pathway AT1G54490
GO:0009961
ISO
PLAZA Integrative Orthologyresponse to 1-aminocyclopropane-1-carboxylic acid AT1G54490
GO:0009630
ISO
PLAZA Integrative Orthologygravitropism AT1G54490
GO:0006402
ISO
PLAZA Integrative OrthologymRNA catabolic process AT1G54490
GO:0060149
ISO
PLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencing AT1G75660
GO:0009723
ISO
PLAZA Integrative Orthologyresponse to ethylene AT1G54490
GO:0061014
ISO
PLAZA Integrative Orthologypositive regulation of mRNA catabolic process AT1G54490
GO:0051301
ISO
PLAZA Integrative Orthologycell division AT1G54490
GO:0009826
ISO
PLAZA Integrative Orthologyunidimensional cell growth AT1G54490
GO:0070370
ISO
PLAZA Integrative Orthologycellular heat acclimation AT1G54490
GO:0071035
ISO
PLAZA Integrative Orthologynuclear polyadenylation-dependent rRNA catabolic process AT1G75660
GO:0000291
ISO
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, exonucleolytic AT1G54490
GO:0010587
ISO
PLAZA Integrative OrthologymiRNA catabolic process AT1G75660
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000956
IBA
GOA Databasenuclear-transcribed mRNA catabolic process
GO:0010286
ISO
PLAZA Integrative Orthologyheat acclimation AT1G54490

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G54490
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G54490
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0004527
IEA
InterProexonuclease activity
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0004534
IBA
IEA
GOA Database5'-3' exoribonuclease activity
GO:0004534
IEA
InterPro5'-3' exoribonuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004518
IEA
GOA Databasenuclease activity
GO:0003723
IBA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010494
ISO
PLAZA Integrative Orthologycytoplasmic stress granule AT1G54490
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT1G54490
GO:0005844
ISO
PLAZA Integrative Orthologypolysome AT1G54490
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G54490
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027073 5'-3' exoribonuclease
IPR001878 Zinc finger, CCHC-type
IPR041412 Xrn1, helical domain
IPR017151 5'-3' exoribonuclease type 2
IPR004859 Putative 5-3 exonuclease
Mapman id Description
16.4.3.2 RNA processing.RNA surveillance.non-canonical RNA decapping and decay.exoribonuclease (RAT1/XRN2)