Gene: PGSC0003DMG401000517

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG401000517
  • Transcript Identifier PGSC0003DMT400001391
  • Gene Type Coding gene
  • Location ST4.03ch02 : 47193042-47199363 : positive

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37428352
  • id PGSC0003DMG401000517.v4.03
  • uniprot M0ZID7

Descriptions

  • Description ATP-dependent RNA helicase DB10
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT3G01540
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc01g057760.4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016887
ISO
PLAZA Integrative OrthologyATP hydrolysis activity AT3G01540
GO:0003724
IBA
IEA
GOA DatabaseRNA helicase activity
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0005515
IEA
InterProprotein binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1990904
IBA
GOA Databaseribonucleoprotein complex
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT3G06480
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G14610
GO:0005737
IBA
GOA Databasecytoplasm
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036020 WW domain superfamily
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR001202 WW domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
35.1 not assigned.annotated