Gene: AT3G06480

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G06480
  • Transcript Identifier AT3G06480.2
  • Gene Type Coding gene
  • Location Chr3 : 1986710-1989666 : negative

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G06480.2
  • uniprot Q9SQV1

Descriptions

  • Description DEAD box RNA helicase family protein
  • Computational description DEAD box RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase 1 (TAIR:AT3G01540.4); Has 132761 Blast hits to 82344 proteins in 3707 species: Archae - 865; Bacteria - 47475; Metazoa - 37917; Fungi - 12444; Plants - 11781; Viruses - 886; Other Eukaryotes - 21393 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc01g057760.4
GO:0000184
IEA
GOA Databasenuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0042254
IEA
GOA Databaseribosome biogenesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
IEA
InterProprotein binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003724
IBA
IEA
Gene OntologyRNA helicase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005773
IDA
GOA Databasevacuole
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:1990904
IBA
Gene Ontologyribonucleoprotein complex1
GO:0000325
HDA
Gene Ontologyplant-type vacuole2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001202 WW domain
IPR001650 Helicase, C-terminal
IPR036020 WW domain superfamily
IPR011545 DEAD/DEAH box helicase domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
35.1 not assigned.annotated