Gene: PGSC0003DMG400029391

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400029391
  • Transcript Identifier PGSC0003DMT400075574
  • Gene Type Coding gene
  • Location ST4.03ch12 : 57715993-57720731 : positive

Gene Family Information

  • ID HOM05D000949
  • #Genes/#Species 633/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37449428
  • id PGSC0003DMG400029391.v4.03
  • uniprot M1CVE7

Descriptions

  • Description Poly(A) polymerase beta
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006378
IBA
GOA DatabasemRNA polyadenylation
GO:0031123
IEA
GOA DatabaseRNA 3'-end processing
GO:0031123
IEA
InterProRNA 3'-end processing
GO:0043631
IEA
GOA DatabaseRNA polyadenylation
GO:0043631
IEA
InterProRNA polyadenylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G25850
GO:0004652
IBA
IEA
GOA Databasepolynucleotide adenylyltransferase activity
GO:0004652
IEA
InterPropolynucleotide adenylyltransferase activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0016779
IEA
InterPronucleotidyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007012 Poly(A) polymerase, central domain
IPR043519 Nucleotidyltransferase superfamily
IPR002934 Polymerase, nucleotidyl transferase domain
IPR011068 Nucleotidyltransferase, class I-like, C-terminal
IPR007010 Poly(A) polymerase, RNA-binding domain
IPR014492 Poly(A) polymerase
Mapman id Description
16.3.1.1.1 RNA processing.RNA 3'-end processing.mRNA polyadenylation.poly(A) RNA polymerase activity.poly(A) RNA polymerase