Gene: PGSC0003DMG400027373

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400027373
  • Transcript Identifier PGSC0003DMT400070406
  • Gene Type Coding gene
  • Location ST4.03ch11 : 44060172-44064362 : negative

Gene Family Information

  • ID HOM05D000327
  • #Genes/#Species 1418/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37466969
  • id PGSC0003DMG400027373.v4.03
  • uniprot M1CM44

Descriptions

  • Description Zinc finger family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006511
IBA
GOA Databaseubiquitin-dependent protein catabolic process
GO:0010476
ISO
PLAZA Integrative Orthologygibberellin mediated signaling pathway AT2G26130
GO:0009788
ISO
PLAZA Integrative Orthologynegative regulation of abscisic acid-activated signaling pathway AT2G26130
GO:0010431
ISO
PLAZA Integrative Orthologyseed maturation AT2G26130
GO:0140547
ISO
PLAZA Integrative Orthologyacquisition of seed longevity AT2G26130
GO:0000209
IBA
GOA Databaseprotein polyubiquitination
GO:0032436
IBA
GOA Databasepositive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IEA
InterProprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G43750
GO:0031624
IBA
GOA Databaseubiquitin conjugating enzyme binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0061630
IBA
GOA Databaseubiquitin protein ligase activity
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0004523
IEA
GOA DatabaseRNA-DNA hybrid ribonuclease activity
GO:0004523
IEA
InterProRNA-DNA hybrid ribonuclease activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT2G26130
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G43750
GO:0009705
ISO
PLAZA Integrative Orthologyplant-type vacuole membrane AT2G26130
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G21420
GO:0005737
IBA
GOA Databasecytoplasm
GO:0000151
IBA
GOA Databaseubiquitin ligase complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036397 Ribonuclease H superfamily
IPR031127 E3 ubiquitin ligase RBR family
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR002867 IBR domain
IPR012337 Ribonuclease H-like superfamily
IPR002156 Ribonuclease H domain
Mapman id Description
19.2.2.1.4.4.4 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.plant-specific E3 ubiquitin ligase (RSL/RFA)