Gene: PGSC0003DMG400018250
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400018250
- Transcript Identifier PGSC0003DMT400046987
- Gene Type Coding gene
- Location ST4.03ch01 : 78674275-78677430 : negative
Gene Family Information
- ID HOM05D001642
- #Genes/#Species 393/100
- Phylogenetic origin
- ID ORTHO05D002129
- #Genes/#Species 314/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- pacid 37440896
- id PGSC0003DMG400018250.v4.03
- uniprot M1BJZ3
Descriptions
- Description Global transcription factor group
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006260 | IEA | GOA Database | DNA replication | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0034724 | IBA | GOA Database | DNA replication-independent nucleosome organization | |
| GO:0006368 | IBA | GOA Database | transcription elongation from RNA polymerase II promoter | |
| GO:0032968 | IBA | GOA Database | positive regulation of transcription elongation from RNA polymerase II promoter | |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT4G10710 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031491 | IBA | GOA Database | nucleosome binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0035101 | IBA IEA | GOA Database | FACT complex | |
| GO:0035101 | IEA | InterPro | FACT complex | |
| GO:0005694 | IEA | GOA Database | chromosome | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0000791 | ISO | PLAZA Integrative Orthology | euchromatin | AT4G10710 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT4G10710 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011993 | PH-like domain superfamily |
| IPR029149 | Creatinase/Aminopeptidase P/Spt16, N-terminal |
| IPR040258 | FACT complex subunit Spt16 |
| IPR013953 | FACT complex subunit Spt16 domain |
| IPR036005 | Creatinase/aminopeptidase-like |
| IPR029148 | FACT complex subunit Spt16, N-terminal lobe domain |
| IPR000994 | Peptidase M24 |
| IPR013719 | Domain of unknown function DUF1747 |
| IPR033825 | FACT complex subunit Spt16, peptidase M24-like domain |
| Mapman id | Description |
|---|---|
| 12.2.2.1 | Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.component SPT16 |