Gene: PGSC0003DMG400014121

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400014121
  • Transcript Identifier PGSC0003DMT400036620
  • Gene Type Coding gene
  • Location ST4.03ch03 : 56927377-56928201 : positive

Gene Family Information

  • ID HOM05D000479
  • #Genes/#Species 1104/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37459811
  • id PGSC0003DMG400014121.v4.03
  • uniprot M1B3X6

Descriptions

  • Description Ccr4-associated factor
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic
GO:0043928
IBA
GOA Databaseexonucleolytic catabolism of deadenylated mRNA

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004535
IBA
IEA
GOA Databasepoly(A)-specific ribonuclease activity
GO:0004535
IEA
InterPropoly(A)-specific ribonuclease activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G32070

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030014
IEA
GOA DatabaseCCR4-NOT complex
GO:0030014
IEA
InterProCCR4-NOT complex
GO:0005634
IEA
GOA Databasenucleus
GO:0030015
IBA
GOA DatabaseCCR4-NOT core complex
GO:0000932
IBA
GOA DatabaseP-body

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006941 Ribonuclease CAF1
IPR039637 CCR4-NOT transcription complex subunit 7/8/Pop2
IPR012337 Ribonuclease H-like superfamily
IPR036397 Ribonuclease H superfamily
Mapman id Description
35.1 not assigned.annotated