Gene: PGSC0003DMG400012988
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400012988
- Transcript Identifier PGSC0003DMT400033802
- Gene Type Coding gene
- Location ST4.03ch09 : 4369523-4376310 : negative
Gene Family Information
- ID HOM05D000428
- #Genes/#Species 1201/100
- Phylogenetic origin
- ID ORTHO05D000582
- #Genes/#Species 762/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pacid 37455740
- id PGSC0003DMG400012988.v4.03
- uniprot M1AZP8
Descriptions
- Description Polyadenylate-binding protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016071 | ISO | PLAZA Integrative Orthology | mRNA metabolic process | AT3G16380 |
| GO:0006413 | ISO | PLAZA Integrative Orthology | translational initiation | AT3G16380 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003723 | IBA IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003730 | IBA | GOA Database | mRNA 3'-UTR binding | |
| GO:0008266 | IBA | GOA Database | poly(U) RNA binding | |
| GO:0008143 | IBA | GOA Database | poly(A) binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005829 | IBA | GOA Database | cytosol | |
| GO:0005634 | IBA | GOA Database | nucleus | |
| GO:1990904 | IBA | GOA Database | ribonucleoprotein complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR035979 | RNA-binding domain superfamily |
| IPR036053 | PABC (PABP) domain |
| IPR002004 | Polyadenylate-binding protein/Hyperplastic disc protein |
| IPR000504 | RNA recognition motif domain |
| IPR003954 | RNA recognition motif domain, eukaryote |
| IPR006515 | Polyadenylate binding protein, human types 1, 2, 3, 4 |
| Mapman id | Description |
|---|---|
| 17.4.2.5 | Protein biosynthesis.translation initiation.mRNA loading.mRNA poly-A-tail binding factor (PABP) |