Gene: AT2G38950

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G38950
  • Transcript Identifier AT2G38950.1
  • Gene Type Coding gene
  • Location Chr2 : 16261599-16265044 : positive

Gene Family Information

  • ID HOM05D000329
  • #Genes/#Species 1418/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G38950.1
  • uniprot Q8L7T6

Descriptions

  • Description Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
  • Computational description Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), Transcription factor jumonji, JmjN (InterPro:IPR003349); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G08620.2); Has 1894 Blast hits to 1417 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 1050; Fungi - 421; Plants - 287; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated1
GO:0006338
IBA
Gene Ontologychromatin remodeling2
GO:0034721
IEA
GOA Databasehistone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0016577
IEA
GOA Databasehistone demethylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034647
IBA
Gene Ontologyhistone demethylase activity (H3-trimethyl-K4 specific)2
GO:0032452
IBA
Gene Ontologyhistone demethylase activity2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004198 Zinc finger, C5HC2-type
IPR003347 JmjC domain
IPR003349 JmjN domain
Mapman id Description
12.3.3.8.4 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM7)