Gene: PGSC0003DMG400010721
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400010721
- Transcript Identifier PGSC0003DMT400027843
- Gene Type Coding gene
- Location ST4.03ch02 : 32808673-32816052 : negative
Gene Family Information
- ID HOM05D006143
- #Genes/#Species 129/89
- Phylogenetic origin
- ID ORTHO05D007587
- #Genes/#Species 129/89
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pacid 37427546
- id PGSC0003DMG400010721.v4.03
- uniprot M1AQ91
Descriptions
- Description SNI1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010113 | IBA IEA | GOA Database | negative regulation of systemic acquired resistance | |
| GO:0009627 | ISO | PLAZA Integrative Orthology | systemic acquired resistance | AT4G18470 |
| GO:0002215 | IEA | GOA Database | defense response to nematode | |
| GO:0016570 | IBA IEA | GOA Database | histone modification | |
| GO:0016444 | IEA | GOA Database | somatic cell DNA recombination | |
| GO:0051572 | IEA | GOA Database | negative regulation of histone H3-K4 methylation | |
| GO:0043966 | IEA | GOA Database | histone H3 acetylation | |
| GO:0045892 | IBA IEA | GOA Database | negative regulation of transcription, DNA-templated | |
| GO:0045892 | IEA | InterPro | negative regulation of transcription, DNA-templated | |
| GO:0031348 | IEA | GOA Database | negative regulation of defense response | |
| GO:0031348 | IEA | InterPro | negative regulation of defense response | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0006974 | IEA | InterPro | cellular response to DNA damage stimulus |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G18470 |
| GO:0000976 | IBA IEA | GOA Database | transcription cis-regulatory region binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IBA IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0030915 | IEA | GOA Database | Smc5-Smc6 complex | |
| GO:0030915 | IEA | InterPro | Smc5-Smc6 complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR034561 | Negative regulator of systemic acquired resistance SNI1 |
| Mapman id | Description |
|---|---|
| 14.3.6.3.2 | DNA damage response.homologous recombination repair (HR).Smc5-Smc6 complex.NSE5-NSE6 subcomplex.component NSE6/SNI1 |
| 26.9.3.1.3 | External stimuli response.pathogen.defense mechanisms.systemic acquired resistance (SAR).regulatory protein (SNI1) |