Gene: PGR142G4413
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR142G4413
- Transcript Identifier PGR142G4413.01
- Gene Type Coding gene
- Location NC_045128.1 : 27008872-27022098 : negative
Gene Family Information
- ID HOM05D002001
- #Genes/#Species 331/99
- Phylogenetic origin
- ID ORTHO05D006833
- #Genes/#Species 137/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pid XP_031378451.1
- name LOC116193840
- name XM_031522591.1
- id gene-LOC116193840
- uniprot A0A6P8CA44
Descriptions
- product cleavage and polyadenylation specificity factor subunit 3-II
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010197 | ISO | PLAZA Integrative Orthology | polar nucleus fusion | AT2G01730 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G01730 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0016020 | IEA | GOA Database | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001841 | Zinc finger, RING-type |
| IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like |
| IPR041897 | Integrator complex subunit 11, MBL-fold |
| IPR022712 | Beta-Casp domain |
| IPR001279 | Metallo-beta-lactamase |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
| Mapman id | Description |
|---|---|
| 16.3.1.2.4 | RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.nuclease component CPSF73-II |
| 19.2.2.1.4.3.3.7 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class ligase activities.ubiquitin protein ligase (RIE1) |